Sequence
atgc intronic sequence ATGC exonic sequenceAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATgtaagccattacatgtcatacttgcctacatgttttgtggtattcagtttttgcaatgttttaacatgggacttaaaataaaaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g09740.1 (Oryza sativa), 5'ss of exon 9
AAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATgtaagccattacatgtcatacttgcctacatgttttgtggtattcagtttttgcaatgttttaacatgggacttaaaataaaaacag--
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AAATATTGCAAACAACAATTTCAATGGCTGGATACCACAAGAATTCAGTTCAATCCCAGATCTGACgtatg-----agatacttttactgcc--ctttctctttggaaatca-tctttgacacactctaatgacctgttgcaattacaaccatag
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G103070_T02 (Zea mays), 5'ss of exon 9
AAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATgtaagccattacatgtcatacttgcctacatgttttgtggtattcagtttttgcaatgttttaacatgggacttaaaataaaaacag--
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AAACATAGCAAACAACAATTTCAGTGGTTGGATACCAAAAGAATTCAGCTCCATTCCAGATGTAACgtatg---ttccaagtcttacttcactt----ttgtatggaaatt-gtcaatgctgggttttaatggctttctgtaaatgcaatcgcag
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 9
AAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATgtaagccattacatgtcat------acttgcctacatgttttgtggtattcagt---ttttgcaatgtt-ttaacatgggacttaaaataaaaacag-
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AAATGTTGCAAACAATAATTTCAGTGGATGGATACCCCATGAGCTTAGTTCCATCCGTAATTTCATgtaagtatttatggattgttgtttgaaatgcctatccgttttctaatgcataataacttcagcaatgtggttaatgtgactctttaaatgttaactag
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G00970.1 (Glycine max), 5'ss of exon 9
AAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATgtaagc--cattacatgtcat---acttgcctacatgttttgtggtattcagtttttgcaatgtt-ttaacatgggacttaaaataaaaacag-
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AAATGTTGCAAACAATAATTTCAGTGGATGGATACCCCATGAGCTTAGTTCCATCCATAATTTCATgtaagtattatggattgttgtttgaaatgcctatctgttttctaatgcatagcttcagcaatgtggttaatgtgactctttaaatattaactagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110701130|gb|EE078389.1|EE078389EST: AATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTAT ATATGATGGAAATTCATTCGACAATGGTCCTGCTCCTCCTCCTCCACCGTA
genomic: AATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATgtaagccatt ... ataaaaacagATATGATGGAAATTCATTCGACAATGGTCCTGCTCCTCCTCCTCCACCGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATgtaagccattacatgtcatacttgcctacatgttttgtggtattcagtttttgcaatgttttaacatgggacttaaaataaaaacag
- - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - AGATCA