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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTTTATCTGCATTTGATTCAGATGCATCACTTGATGTCTTGAGCCATCCGATCTTGAACTTGATCTACTACATGgtattcttctaacctcgttgcttacaaactttcctctagtcggcatcttgtacctttcttttaacttttgaattattatttactaaaaaaaacag

Basic information

species Vitis vinifera
transcript Vv10s0116g00020.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G01820.1 (Glycine max), 5'ss of exon 10
GTTGTTTTATCTGCATTTGATTCAGATGCATCACTTGATGTCTTGAGCCATCCGATCTTGAACTTGATCTACTACATGgtattcttctaacctcgttgcttacaaactttcctctagtcggcatcttgtacctttcttttaacttttgaattattatttactaa--aaaaaacag
| | || | ||||||||||||||||||||||| ||| |||| |||   ||||| || ||| ||||||| || ||||||||||            | |||||    | |    | |  |       ||||  |||||||   | ||   | ||| | || |||    |||| ||||
GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGgtat------------gatgctttagtattcctttttgttttttgatttgtcactttcttagcatttggaatttacttttcacttttcaaaatacag

upper sequence: Vv10s0116g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G38920.2 (Glycine max), 5'ss of exon 10
GTTGTTTTATCTGCATTTGATTCAGATGCATCACTTGATGTCTTGAGCCATCCGATCTTGAACTTGATCTACTACATGgtattcttctaacctcgttgcttacaaactttcctctagtcggcatcttgtacctttcttttaacttttgaattattatttactaa--aaaaaacag
| | || | ||||||||||||||||||||||| || ||||| |||   ||||| || ||| ||||||| || | ||||||||            |  |||||   | |    | |  |      |||||  |||||||   | ||   | ||| | ||  ||    |||| ||||
GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATGgtat------------gacgcttaagtattcctttttgttttttgacttgtcactttcttagcatttggaatttacttttcgcttttcaaaatacag