Sequence
atgc intronic sequence ATGC exonic sequenceAATCCAGATTTAAACCAGTCTCCAGCAACACCCTTTGACATGGGAAGTGGCTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtatttaagacttgaagttaatatactctttctttatggaaatctatcaaaaaaaagaaaagaaaaaaaagctctttctttatagaaggctttgac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g56320.1 (Oryza sativa), 5'ss of exon 9
AATCCAGATTTAAACCAGTCTCCAGCAACACCCTTTGACATGGGAAGTGGCTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtatttaagacttgaagttaatatactctttctttatggaaatctatcaaaaaaaagaaaagaaaaaaaagctctttctttatagaaggctttgac-
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AATCCAAATTCAACTCAATCTCCAGCTACACCTTTTGACATGGGAAATGGATTTGTCAATGCTACTGCTGCTTTGGATCCTGGGCTCATATTTGATTCCAgtaagttcaactgccatttcttctgtttattttactattatcagtacctct-acctttggtagagttcactggggcctatgttatacaaactccgttccaa
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G13590.1 (Glycine max), 5'ss of exon 10
AATCCAGATTTAAACCAGTCTCCAGCAACACCCTTTGACATGGGAAGTGGCTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtatt-taagacttgaagttaatatactctt---tctttatggaaatctatcaaaa----aaaag-----aaaagaaaaaaaagctctttctttatagaaggctttgac------------------------------------------------------------------------------
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TCCATAGACCTTAACCTATCTCCAGCAACTCCCTTTGACATGGGAAGTGGTTTTGTGAATGCAACTGCAGCATTAAATCCAGGATTGCTTTTTGATTCTGgtaagtctcacttgacttaa--ctaataaacttttaaatcattata-atatccatgcaagtttcaaatgtttcaaaaattcagcaacgatgtctcact-taactagctcaaatttatgaaagcagctgcttgattaataaacaaacctgatttcagaattttcaagtgtgtttacacatttttctttgtag
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G30460.1 (Glycine max), 5'ss of exon 10
AATCCAGATTTAAACCAGTCTCCAGCAACACCCTTTGACATGGGAAGTGGCTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtatt----------taagacttgaagttaatatactctttctttatgg--aaatctatcaaaaa------aaagaaaagaaaaaaaagctctttctt-tatag---aaggctttgac----------------------------------------------------------------------
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TCCATAGACCAAAACCTATCTCCAGCAACTCCCTTTGACATGGGAAGTGGTTTTGTGAATGCTACTGCAGCATTAAATCCGGGATTGCTTTTTGATTCTAgtaagtctcaattgactaatgaactttcaaatcattataatttccatgcaagttcaaatgtttcaaaaattcagcaacgattgttgttcaaatgtctcacttatctagctcaaatttatgaaagctgcttgattaataaacaagcctgttttctgaattttcaaatgtgtttatacatatttttctttgtag
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G21920.1 (Glycine max), 5'ss of exon 9
AATCCAGATTTAAACCAGTCTCCAGCAACACCCTTTGACATGGGAAGTGGCTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtatttaagac-ttgaagttaatatactctttctttatggaaatctatcaaaaaaaagaaaagaaaaaaaagctctttctttatagaaggctttgac----
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TCTCCAGATCTAAATCAGTCTCCGGCAACTCCTTTTGACATGGGAAGTGGTTTTGTGAATGCAAGTGGAGCACTGAACCCGGGTTTAGTTTTTGATTCTGgtaagtcactaaaacatttcaatcattatgct-----tcaataaaaattctcatgtttcaatatatgaaaaaatggcattaaaaattcagctgattgtggtttaa
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G09850.1 (Glycine max), 5'ss of exon 10
AATCCAGATTTAAACCAGTCTCCAGCAACACCCTTTGACATGGGAAGTGGCTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagt-atttaagacttgaagttaatatactctt-tctttatggaaatctatcaaaaaaaagaaaagaaaaaaaagctctttctttatagaaggctttgac
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TCTCCAGATCAAAACCAGCCTCCGGCAACTCCTTTTGACATGGGAAGTGGTTTTGTGAATGCAAGTGGAGCACTGAATCCGGGTTTGGTTTTTGATTCTGgtaagtcacttaagcattgcaatcattttgcttcaataaaaattctcatgtttcaatatataaaaagtggcatgaaaattcagctacgattatggtttaa--
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G30600.1 (Arabidopsis thaliana), 5'ss of exon 9
AATCCAGATTTAAACCAGTCTCCAGCAACACCCTTTGACATGGGAAGTGGCTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtattt-----aagacttgaagttaatatactctttctttatggaaatctatcaaaaaaaagaaaagaaaaaaaagctctttctttatagaaggctttgac
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AACCCCGACATTAGTCAGTCCCCTGCAACACCGTTTGATATGGGTAGCGGATTTGTTAATGCAACTGCAGCTCTTGACCCTGGTTTGATTTTTGACATAGgtaaatactttcttgaacccccaatgttcatattattttaccttgagcatatgaaaaaggagatcaatcactgatatgaaatgtggctgcaaatgtag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71867497|gb|DT016552.1|DT016552EST: CTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAA GTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTA
genomic: CTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtattt ... gttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCCAGATTTAAACCAGTCTCCAGCAACACCCTTTGACATGGGAAGTGGCTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtatttaagacttgaagttaatatactctttctttatggaaatctatcaaaaaaaagaaaagaaaaaaaagctctttctttatagaaggctttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaga