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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAATACCTTTAATAGGCTGTGGGGGCATTAGCAGgtaaaatatcggcacaaccttgtcatcatgacagctgtgggtcatatgtgtatatatatatattcaccttttctgaagtcttttttttttttgaactttgtttgatatgtttggttcag

Basic information

species Vitis vinifera
transcript Vv10s0042g00140.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G23670.1 (Glycine max), 5'ss of exon 9
GGAAGAATACCTTTAATAGGCTGTGGGGGCATTAGCAGgtaaaatatcggcacaaccttgtcatcatg-acagctgtgggtcatatgtgtatatatata-tattcacctt----ttctgaagtcttttttttttttgaactttgtttgatatgtttggttcag-----
||  | || ||||| || |||||||||||||||||||||||||| |    ||    | |    ||||  |    ||| | | ||   ||  ||| || | | |    |||    ||   ||  | |   || |       | ||||| |  | |||   | |      
GGCCGGATTCCTTTGATTGGCTGTGGGGGCATTAGCAGgtaaaa-actaacatgttccttcactcattcattagtgtagctgattactggttatctacagtgtatctcttatgatttaaaaaacatgaattatacaattatctgtttaagctttttatattaatttag

upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G43220.1 (Glycine max), 5'ss of exon 9
GGAAGAATACCTTTAATAGGCTGTGGGGGCATTAGCAGgtaaaa-tatcggcacaaccttgtcatcat--gacagctgtgggtcatatgtgtata-tatatatattcaccttttctgaagtcttttttttttttgaactttgtttgatatgtttggttcag-----
|| || || ||||| || |||||||||||||||||||||||||| ||   |  |   |      ||||  |  |||||      |  | | || | | ||| | || |   ||| | ||   |   || |     || ||||| |||  | |||   | |      
GGCAGGATTCCTTTGATTGGCTGTGGGGGCATTAGCAGgtaaaactacatgttccttcactcattcattagttagctgattactagttatctacagtgtatttttttatgatttttaaaaaatgaattatacaataa-tttgtctgacctttttatattaatttag