1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAGGGAATTGGCCGACTATATTATTTATATAATAGATGTATCTGGTGGTGACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttttctaattctcttcagttatacctgctgcagttacttttggcactcagaaagaagatccaagcattaggaagtttgacagtaacgagggtttgattttgaattgtag
species | Vitis vinifera |
transcript | Vv10s0003g03120.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|30297699|gb|CB974493.1|CB974493
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|110377199|gb|EC942256.1|EC942256
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|32459190|gb|CD800364.1|CD800364
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|110370143|gb|EC934323.1|EC934323
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|30297767|gb|CB974561.1|CB974561
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAACCAAGACTGCCCTTGCACCACCAGTTGGAGCTGACTTGGCAGTGEST: gi|110389282|gb|EC954107.1|EC954107
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|110695590|gb|EE073783.1|EE073783
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|30297878|gb|CB974672.1|CB974672
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|34320115|gb|CF372869.1|CF372869
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|34363050|gb|CF404635.1|CF404635
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|22014004|gb|BQ799038.1|BQ799038
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|22012463|gb|BQ797497.1|BQ797497
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|110703836|gb|EE081029.1|EE081029
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTGEST: gi|22015218|gb|BQ800252.1|BQ800252
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
EST: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTA GTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
genomic: ACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttt ... tgaattgtagGTGATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCTGACTTGGCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGGAATTGGCCGACTATATTATTTATATAATAGATGTATCTGGTGGTGACAAAATTCCTCGGAAAGGAGGCCCAGGCATAACCCAAGCTGATCTCCTAgtatgtgttttctaattctcttcagttatacctgctgcagttacttttggcactcagaaagaagatccaagcattaggaagtttgacagtaacgagggtttgattttgaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT