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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagatttttccttgatgcttcaaattttacaagtgaaaaatactaatgaatctctcttttttacttgcttgtgttgtcctctctgcag

Basic information

species Vitis vinifera
transcript Vv10s0003g02830.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 14
ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagatttttccttgatgcttcaaattttacaagtgaaaaatactaatgaatctctcttttttacttgcttgtgttgtcctctctgcag
 || | || ||| ||||| ||||| || ||||| || |||||| | ||||||||||| ||||| ||||||||||| || || || |||||| |  | |||||   |  |  ||  | ||| |     || | || | | ||  |     |||  | |   ||  | |    | |  ||            
GTCTAGCACGCCAAATGGGCAGCCAAAATGGCTCCTATCTTTTGTACCAGATTATCCATTGCTTAACTTCATGCTTACTACAGCAATCTATCTTCTTgtaagtgaacctgcccagggtgcattttcattcaaaaattataatcatc---gaagttattaattcca-tgatgtatactgcag---------

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 9
ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagatt-tttccttgatgcttcaa-attttacaagtgaaaaatactaatgaatctctcttttttacttgcttgtgttgtcctctc-----tgcag
 || | || ||| |||||||| || ||||||||||||| ||| || |||||||||||  |||| ||||||||||| || || || |||||| |  | |||||  |     |||         |||  | ||   |||  || | | | | | ||      |        | ||  | |  |  |||      |||||
GTCTAGCATGCCAAATGGACAACCAAAGTGGCTTCTTTGTTTCATACCAGATTATCCTATGCTTAACTTCATGCTTACTACAGCGATCTATCTTCTTgtaagttgccaacttcaaacccatctcagtacttggaaagaaaacagttccattcaacagtcataaaaaggatactcatttcattatctaataaatgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 15
ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagatttttcc---------ttgatgcttcaaattttacaagtgaaaaatactaatgaatctc-tcttttttacttgcttgtgttgtcctctctgcag------------------
 || |||| ||| || |||||||| ||||||||||||||| |||| || || |||||  |||||||||||||||| || ||||| || ||  |||| ||||| |  ||| | |         || ||  |||  ||||||  | |    ||  || |||||   | || |  | | ||||   | |||    | ||||                    
GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatctttcttctttcctttgtttatttttcttattttattaatattcaagtctcatgaaaggcatcatagtaagttgcactttttgcttgcactgctatcttgacatggtttgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 15
ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagattttt-----ccttgatgcttcaaattttacaagtgaaaaata-------ctaatgaatctc-tcttttttacttgcttgtgttgtcctctctgcag------------------
 || |||| ||| || |||||||| ||||||||||||||| |||| || || |||||  |||||||||||||||| || ||||| || ||  |||| ||||| |  || ||     | || ||   |  | ||||   | | |  ||||       || |||||   | || |  | | ||||   | ||     | ||||                    
GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatcttctttccttctttcatttgtttatttttcttattaattaatattcaagtcttatgaaaggcatcatactaagttgcactttttacatgcactgctatcttgacatggtttgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S357_34V6.1 (Physcomitrella patens), 5'ss of exon 14
ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagattt-----ttccttgatgcttcaaattttac--aagtgaaaaatactaatgaatctctcttttttacttgctt-gtgt-tgtcctctctgcag--------------
  |    |   | |||||||| || |||  | | || ||  ||||||  || ||||| ||||||||||||||| | ||  |||||||||||||||| |||||||  |       |   |||||  || | || |||    | | |  ||| |||   | | | |  | | || ||| || || | |    | |  |                 
GACTGGTATCTCAAATGGACAACCAAAGCTGTTACTGTCCATTATTCAGGACTATCCATTGCTCAACTTCATGTTGACATCTGCCATCTATATCTTGgtaagcatttgccaagctagtttgatatttgagatgttatttgattaagtaatcctag-aactttttggtgtgtaattgtttagtatctaatattttggttactctttggctttag