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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGTGAACAACAAAACTGCTAGTGCAAGTGAAATTgtgagcagctcaaatacctttttatatgcagttaccctgcaatttttatacatgtagcacttaagcaaggcttctttctcag

Basic information

species Vitis vinifera
transcript Vv10s0003g02730.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02730.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G29820.1 (Glycine max), 5'ss of exon 10
GTTTTGGTGAACAACAAAACTGCTAGTGCAAGTGAAATTgtgagcagctcaaatacct--ttttatatgcagttaccctgcaatttttatacatg-tagcact-taagcaaggcttctttctcag
 |||| || ||  ||||||||||||||||||||||||| ||||| ||||||| | |    | |  |||    || |  | | | ||   |  ||| |   ||| || |    |    | | ||||
ATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATAgtgaggagctcaatttctcaatatattatttgtttgcttttccacttactttgatgatgtgactataggtgttgtacttatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110364067|gb|EC927709.1|EC927709
EST:     GTTTTGGTGAACAACAAAACTGCTAGTGCAAGTGAAATT                         GTTTCCGCTGCCCTTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGG
genomic: GTTTTGGTGAACAACAAAACTGCTAGTGCAAGTGAAATTgtgagcagct ... tctttctcagGTTTCCGCTGCCCTTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGG