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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgtagatcattatattatctata...

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 9
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcat-----tttatttatttc---------------ccctttattgtggttttgtcagtta--ataacaacatagatgagaccagtt--aataaca-acgtagatcattatatta-tctata----------------------------------------------------------
||||||||||||||||| || || ||||| || || ||||| ||||  ||||| || ||||||||||||||||||||||| |||||||||||||||||  ||||      ||||  || |                 | | | || | ||||  |     |  || | ||  ||| || |  || ||  ||||| | |    |  ||  | ||   | || |                                                          
GTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGgtaagcatacaatcttatccatgttgagtcatatatcacgtcatcttttatagtttcctggacaactatgaaaatgtagctgggctcatttccaataatagattctggacaccagatagctttacaatgcaatgtataaataaggaggtgcatacaggtactgatttttctaacttctgcgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcat---tttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaa--cgtagatcattatattatctata------------------------------------------------------------------------------------------------
||||||||||| ||||| || || || || || || |||||||| |  |||||||| || |||||||| |||||||| || || || ||||||||||| | |||   || | | || |  |  ||    |   ||   || || |     |  ||  ||        || |   |   |  ||  ||  || || || |                                                                                                  
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtac-tgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G472625_T01 (Zea mays), 5'ss of exon 9
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattttatttatttcccctttat-tgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgtagatcattatattatctata-
||||||||||| ||||| || || || || || || |||||||| |  |||||||| || |||||||| |||||||| || || || ||||||||||| | | || | || |  ||   ||| | |     | | | | |  ||  || ||      |    |||||   ||   ||||  ||   |   |  | |  
GTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAGgtattc-ttatgttaaaatcatgtttctgtccacatctatgattccatttcaccagcagctactgtagttatatact-tgtagcccacggtccaaaatgtta

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgca-ttttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgtagatcattatattatctata--------
|| ||||| ||||| || || || ||| | |||||||||||||| | ||| | ||| ||||||||||||||||||||||||||||| ||||||||||| |  | |||||| || || |     ||||  ||||| |||| | || | ||  ||  |   |   || || |     | | ||  | | | | || | |        
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctaaaattttatctactttcagacaattg--gtttt-tcagatgattaaaatgtaattagcat--gtaaacattcctggacattctaacact-tcgaaattgtgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 9
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgca-ttttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgta---gatcattatattatctata------------
|| ||||| ||||| || || || ||| | |||||||||||||| | ||| | ||| ||||||||||||||||||||||||||||| ||||||||||| |  | |||||| || || |     ||||  ||||| || | | || | ||  ||  |   |  |  | || | ||| |    |  |||| ||  |  |  |            
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtatataattttatctactttcagacaattg--gtttt-tctgatgattaaaatgtaattagcatgaaatgatgaaaacattcctggacattctaacacatcaaaattctgtgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgtagatcattatattatctata----------
|| ||||| ||||| || || || ||| | |||||||||||||| | ||| | ||| ||||||||||||||||||||||||||||| ||||||||||| |  | |||   ||| |||     |  || | ||| |||| | |||| ||    ||| |        ||||     |   ||  | | |  ||| | |          
GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataattt---tatctccttcagacagttggtttttcagatgataaaaaatgtgattaacatgaaaaatattcctgggcattctaacac-atcaaaattttatgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattttatttatttccccttt-attgtggttttgtcagttaataacaacatag-----atgagaccagttaataacaacgtagatcattata-ttatctata-
|| ||||| || || || || || ||| | |||||||||||||| | ||| | ||| ||||||||||| ||||||||||||||||| ||||||||||| |  | |||   ||| |||  |   |  |||| ||| |||| | || | ||  |       |||| |  | |      ||   ||   ||| | | || | | || 
GTGCTTGGCACGCCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAGgtctataattt---tatctcctttcagacagtgggtttttcagatgatcaaaatgtgattaacatgaaaatattcctgggcattctaacacatcaaaattgtgtgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgtagatcattatattatctata
||||||||||||||||| || |||||||| || |||||||||||   ||| || ||||| ||||||||||||||||| ||||| || |||||||||||| |  | || | | |||   | |   |||  || | ||||||  |  |  || | || |   | | | ||||  ||||      |||           
GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTACACAGATTTCAGGTTTCCACAGATAAAGGCACATCCCTGGCACAAGgttagtgtcttttctctttttgcatg--tgttcttgtttcagtttctttcttcacacatcaa--ctgatcataattacgttttggtttag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045705|gb|FQ440890.1|FQ440890
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349818413|gb|FQ409188.1|FQ409188
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|110398418|gb|EC964768.1|EC964768
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349821008|gb|FQ404261.1|FQ404261
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|30300367|gb|CB977161.1|CB977161
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|110370230|gb|EC929161.1|EC929161
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349822004|gb|FQ408333.1|FQ408333
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAACACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|110716958|gb|EE092396.1|EE092396
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|30255733|gb|CB971865.1|CB971865
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349814529|gb|FQ399169.1|FQ399169
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|22012531|gb|BQ797565.1|BQ797565
EST:     GTTATACTGA-TTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAA-                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349813455|gb|FQ413689.1|FQ413689
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|352786166|gb|FQ478777.1|FQ478777
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349820741|gb|FQ408570.1|FQ408570
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349819490|gb|FQ413374.1|FQ413374
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|351041679|gb|FQ455889.1|FQ455889
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349812888|gb|FQ410530.1|FQ410530
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349818025|gb|FQ408014.1|FQ408014
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCAATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|71882430|gb|DT031485.1|DT031485
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|351045211|gb|FQ451659.1|FQ451659
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|27583598|gb|CB006293.1|CB006293
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|71888191|gb|DT037246.1|DT037246
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349808118|gb|FQ403305.1|FQ403305
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|71889601|gb|DT038656.1|DT038656
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|30136670|gb|CB922008.1|CB922008
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|110405706|gb|EC971253.1|EC971253
EST:     AGCACACCCTTGGCACAAG                         GTCTTTCACAAGCGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: AGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349818252|gb|FQ409027.1|FQ409027
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349819219|gb|FQ412113.1|FQ412113
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349809698|gb|FQ398305.1|FQ398305
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAACCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349820687|gb|FQ408516.1|FQ408516
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349823319|gb|FQ402518.1|FQ402518
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|83275330|gb|DV938481.1|DV938481
EST:     GGTTTCCACAGATAAAAGCACACCCTTAGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|71887350|gb|DT036405.1|DT036405
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349815183|gb|FQ400338.1|FQ400338
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|71888654|gb|DT037709.1|DT037709
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349820958|gb|FQ408666.1|FQ408666
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|351015241|gb|FQ445525.1|FQ445525
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|351044685|gb|FQ443216.1|FQ443216
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349814811|gb|FQ410034.1|FQ410034
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|110727667|gb|EE104690.1|EE104690
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|56408265|gb|CX016517.1|CX016517
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349819618|gb|FQ413502.1|FQ413502
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTCCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349820569|gb|FQ404064.1|FQ404064
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|351045218|gb|FQ451666.1|FQ451666
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|351014090|gb|FQ434242.1|FQ434242
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|71883314|gb|DT032369.1|DT032369
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349812635|gb|FQ409794.1|FQ409794
EST:     GTTATACTGATTTTAGGTTTCCACGGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|351046670|gb|FQ453286.1|FQ453286
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349820534|gb|FQ404029.1|FQ404029
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|34546815|gb|CF515047.1|CF515047
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349827560|gb|FQ422428.1|FQ422428
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAACAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|349820352|gb|FQ403968.1|FQ403968
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|352790221|gb|FQ481420.1|FQ481420
EST:     GTTATACTGATTTTAGGTTTCCACAGATAANAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTTCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|351023667|gb|FQ448218.1|FQ448218
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|71885864|gb|DT034919.1|DT034919
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|71885157|gb|DT034212.1|DT034212
EST:     GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCACAAACGAATGCCTCCTGAAGCAATTGATCTTGCTTCTCGACTT
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTT
EST: gi|110699260|gb|EE076105.1|EE076105
EST:     GTTATACTGATTTTANGTTTCCACAGATAAAAGCACACCCTTGGCACAAG                         GTCTTTCANCAA-CGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCG
genomic: GTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattt ... ttgggtttagGTCTTTCA-CAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgtagatcattatattatctata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agatgaga