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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACTGGAGCTTATAAGGCTGCGTCTCGGCTAGCAAGTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaattatacttgttggatttatgctccattattcttcacgagtagcaaaattatcactttggatgccatcagacctgataaactgacatgtgac...

Basic information

species Vitis vinifera
transcript Vv10s0003g01460.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110423240|gb|EC989581.1|EC989581
EST:     GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAG                         GGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCTCGACA
genomic: GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaat ... cgttatgcagGGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCTCGACA
EST: gi|30252279|gb|CB969830.1|CB969830
EST:     GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAG                         GGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCCCTACA
genomic: GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaat ... cgttatgcagGGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCTCGACA
EST: gi|30252280|gb|CB969831.1|CB969831
EST:     GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAG                         GGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCCCTACA
genomic: GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaat ... cgttatgcagGGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCTCGACA
EST: gi|30251875|gb|CB969608.1|CB969608
EST:     GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAG                         GGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCCCTACA
genomic: GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaat ... cgttatgcagGGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCTCGACA
EST: gi|30252292|gb|CB969843.1|CB969843
EST:     GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAG                         GGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCCCTACA
genomic: GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaat ... cgttatgcagGGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCTCGACA
EST: gi|30252293|gb|CB969844.1|CB969844
EST:     GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAG                         GGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCCCTACA
genomic: GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaat ... cgttatgcagGGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCTCGACA
EST: gi|30251886|gb|CB969619.1|CB969619
EST:     GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAG                         GGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCCCTACA
genomic: GTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaat ... cgttatgcagGGAATTGGGATCTTACTGAGTGGACTCTTTGGGACATCCACTGGCTCGACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAACTGGAGCTTATAAGGCTGCGTCTCGGCTAGCAAGTGCCACACCACCTCCAGCCCACGTCCTTAGCCGGGGTATCGGCTGGCAGgtctgcaaattatacttgttggatttatgctccattattcttcacgagtagcaaaattatcactttggatgccatcagacctgataaactgacatgtgac

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgataaa