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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatctttttatattgggctattggcttatatatccgattctctttccag

Basic information

species Vitis vinifera
transcript Vv09s0054g01780.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 10
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttgg----aatctttttatattgggctattggcttatatatccgattctctttccag-----------------------------------------------
||||||| | ||||| ||||||||||| || ||||||||||||||||||| | | ||| |||| |||||  | |||||||||||||| |||||||||||||| |  ||   | ||  ||  |  |||| |  ||| |  ||| |   || |    |  |||    | | ||||| |||    || || |        || |  |  ||    ||                                               
TGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGgtaatgttctatgtt-tgctgagtttttctaaatt-taaatgcgttgttttgccaggctggtcatactatttttgtatgcaactctttgggggggattctgccttcctccttaggctagcgtttttctgcactatctaatgctaggtctctatgtgttcag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G139977_T01 (Zea mays), 5'ss of exon 9
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttat---ttattcttgatgagcaattcttatggtttgg--aatctttttatattgggctattggcttatatatccgattctctttccag--------------------------------------
||||||| | |||||  |||||||||| ||||||||||| |||||||||||| ||||  |||| || ||  | ||||||||||| || |||||||||||||| | ||    |   | ||  |  |||| |   | || |    | |     |     |||||||  ||   | ||     || | ||  |  |  | |     || | |  | ||                                      
TGTTTATTTGTCATACTTGGATTCTGTTAAGTACTTCAGACCTGAGATTAAAACAGTATCTGGAGAAGCCTTGCGTACATTTGTGTATCATGAAATTCTGgtaatttgccat-ccatgctgactttttgtgactaatacaaatttattgccttaccaggtttggccaaaactgtttggggggaccatatgactggaaactgttttttttagctaggatttgttcttggtctaatctgttctcattgtgtacag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G470556_T01 (Zea mays), 5'ss of exon 9
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatt--tattcttgatgagcaa--ttcttatggtttg---gaatctttttat---attgggctattggcttatatatccgattctctttccag------------------------------------------
||||||| | |||||  |||||||||| |||||||| || |||||||||||| ||||  | || |||||  | ||||||| ||| ||||||||||||||||| | ||    |   | ||  |  |||| ||  || |    ||        ||   | | ||||    || || | ||    |     | |  ||      | |    |  |||||  ||                                          
TGTTTATTTGTCATACTTGGATTCTGTTAAGTACTTTAGACCTGAGATTAAAACAGTATCCGGAGAGGCCTTGCGTACATATGTATACCATGAAATTCTGgtaatttaccat-ccatgctgactttttgttgctagtacaaatttattgccttaccaggttttgatcaaaactgtctacgagaccatacaacaggaaaccttttttcttcttctttttagctagcatttgttctgggtctaatctgccctcaccgtgtacag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 10
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatctttttatattg-ggctattggcttatatatccgattctctttccag
 || || || |||||| |||||||||||||||| || ||||||||| ||||| ||||||| || |||||||| || || ||||||||||||||||||||||| | |||    | || |    |  |||       |||  | ||  ||  |   | | |||  |  | |  |  ||    |  |   | ||||     ||| |||||  ||
CGTGTACCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaatttggacactaagatcttgctttgga-gcccttccttagagatattctagttctgggttactatcttcctgtaaattatatttgatatgaattatt-tctttttag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 12
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatctttttatattg-ggctattggcttatatatccgattctctttccag
 || ||||| |||||| |||||||||| ||||| || ||||| ||| ||||| |||||||||| |||||||| || || ||||||||||||||||||||||| | |||    |  | |    |  |||    |  |||  | ||  ||  |   | |||||  | || |  |  ||    |  ||  | ||| |    ||| |||||  ||
CGTGTATCTTTCATATTTGGATTCTGTTAAGTATTTTAGGCCCGAGGTTAAAGCAGTGACTGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaatttggacaccaagatgttgctttggc-acccttccttagtgatattctagttttgggttattatcttcctgtaaattatgtttgatacaaattatt-tctttttag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 10
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttg-gaatctttttatattgggctattggcttatatatccgattctctt-tccag--------------------------------------------------
 |||||||| ||||||||||| ||||| ||||| || ||||||||| ||||| |||| ||||| || ||||| || ||||||||||| |||||||||||||| |  ||||||  ||   |   ||| |  || |  | | ||    ||| |   |  ||| | | |  ||| | | | |  |||    |    ||  | |||  |  |  ||                                                  
GGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaacctttagttctaattc---cttgtccttgtgttgggtggaatattatacagccttgtggaaccctttgt-tggagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttttcgttatgattttcttttag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatctttttatattgggctattggcttatatatccgattctctttccag
|||||||||||| ||| ||||||||||||||||||| || ||||| || || || |  | |||||||||||| || || || |||||||| |||||||| || |||| | || || |  |     ||||| |  ||||  |     |     ||| ||        || ||   ||   |  |   | |                     
TGTTTATCTCTCGTATTTGGATTCTGTGAAGTACTTTAGACCTGATATCAAGTCTGCTAATGGGGAGGCTCTGCGCACTTTCGTTTACCACGAAATTCTTgtaagttctggtttttcaacctaggtttatgtggtcttc-tacattacatggatgattcaagggtattataccctga--tgctttttcag--------------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatcttttt--atattgggctatt-ggcttatatatccgattctctttccag
 ||||| || || |||||||| || || ||||||||||| |||||  ||| | ||||  |||| ||||| |||||||| || || ||||||||||||||||| ||    | |  | |    ||| |  | ||  | |      |||  | |  || ||   ||   || |  | | |||||| || || ||  |                   
GGTTTACCTTTCCTATCTGGACTCAGTTAAGTACTTCAGACCTGACGTTAGAACAGTATCTGGAGAGGCCCTCCGTACGTTCGTATACCATGAAATTCTGgtaagccgcatttcttc--tgatcct--agttgctttcag---gcacctgtgttgcttcacaagtcttatcaacaatgggcttttcggattgcag------------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 11
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatctttttatattgggctattggcttatatatccgattctctttccag
 ||||||||||| ||| |||||||||| ||||||||||| || ||| ||| |||    |  || || ||||| ||||| ||||||||||| ||||||||||| |||  | || ||  |  |   |  | ||||  |   ||  |   || |||   | |  | | | |  |     || | |  |  |||| ||| ||| || |||  ||
AGTTTATCTCTCGTATTTGGATTCTGTCAAGTACTTCAGACCCGAGGTTAGATCTTATAACGGAGAAGCTCTGCGTACTTTTGTTTACCACGAAATTCTGgtaagtcctggtcttctgaaaccttggtgtttaaccaatatctgtgctttttactttctacactgtatgga-----ggatctaagagtata-atctgatcctttttatag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S193_70V6.1 (Physcomitrella patens), 5'ss of exon 11
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattac--gccaatcttttatttattcttgatgagcaattcttatggtttgga----atctttttatattgggctattggcttatatatccgattctctttccag
 || ||  | |||||| ||||||||||||| |||||  | || ||  |     | || | ||| |||||||| || || ||||||||||||||||||||||||||   |  |  |    ||      | || | | |     ||  | | |   ||  | || |    ||  | |||| || | | |||||    | ||||  |            
GGTGTACTTGTCATATTTGGATTCTGTGAAATACTTTCGCCCAGATGTGCGGACTGTCAATGGAGAGGCTCTGCGCACTTTTGTTTACCATGAAATTCTGgtgagcactcatcctgtctgctggagatatactgagttgctgtgcaccagtaacattatgtgaacaggattctgttatctttg-caattgg---gtgtatcaaa------------