Sequence
atgc intronic sequence ATGC exonic sequenceACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAGgtaattagcatacaaactaaatgtattatcagtattctcatctatggctgctgtaagcttgaagtgtgttcctgatttttgtttcatctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 6
ACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAGgt--aattagcatacaaactaaatgtattatcagta-ttctcatctatggctg----ctgtaagcttgaagtgtgttcc--tgat-ttttgtttcatctcag-------------------------------------------
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ACATGGCCTGTGCGTTCACCAAGGCCTGTTGCGTCGAAGCTTGCTGCGGATACACCTCTTCTGACAGGGCAGgtttgtctataagttgccttagcttggttgtctataattgtcagtttttgctaaaacttgaaatcgccaagcattttcagacgatgtttccctttatcttactccattaaatcttgaagtcttgtatgctttcaaatggtttcag
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 9
ACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAGgtaattagcatacaaactaaatgtattatcagtattctcatctatggctgc-tgtaagcttgaagtgtgttcctgatttttgtttcatctcag
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ACTTGGCCTGTACGTACACCCAGGCCTGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAGgtaaactcagttgttaccaagtgtctcctccatgatctaat-tgtgatagccttcatgcttaatg---acttctgttttttacag--------
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 9
ACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAGgtaattagcatacaaactaaatgtattatcagtattctcatctatggctgctgtaagcttgaagtgtgttcctgatttttgtttcatctcag
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ACTTGGCCCGTACGTACACCAAGGCCTGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAGgtaaactcagttgttatcaagtgtctcatccataatctaat-tgtgatagctttca-tgcgtaatg-acttctgctttttacag--------
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 9
ACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAGgtaattagcatacaaactaaatgtattatcagtattctcatctatggctgctgtaagcttgaagtgtgttcctgatttttgtt-tcatctcag
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AGCTGGCCTGTACGTACGCCTAGGCCAGTTGCATCAAAGCTTGCTGCCGATACTCCTCTACTTACGGGGCAGgtgattactcgattaattcttcttacagtggtgatagtcatttgaataca-tgtg---ttgctgattgctttcttttcctgttgtcag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110692053|gb|EE070859.1|EE070859EST: GGCCTGTTGCATCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAG CGTGTTCTTGATGCCCTTTTCCCTTCTGTTCTCGGTGGAACTTGTGCCATA
genomic: GGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAGgtaattagca ... ttcatctcagCGTGTTCTTGATGCCCTTTTCCCTTCTGTTCTCGGTGGAACTTGTGCCATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAGgtaattagcatacaaactaaatgtattatcagtattctcatctatggctgctgtaagcttgaagtgtgttcctgatttttgtttcatctcag
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - GCTGAT