Sequence
atgc intronic sequence ATGC exonic sequenceACGTGACTCTGGAGTGAAGTCACCTGTCGAGGATCCAATGGCAATTCTTCAGAAAGGATACTCCATTACAATAATTTTAGCTGTTTTGACATTTGGCTTGgtaagatttcatctaccgtctgaaaatgttggcgttcttcataacagttgattgtggctgctgttttatccgtctttcatcctcaagaatattgtgattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 9
ACGTGACTCTGGAGTGAAGTCACCTGTCGAGGATCCAATGGCAATTCTTCAGAAAGGATACTCCATTACAATAATTTTAGCTGTTTTGACATTTGGCTTGgtaagatttcatctaccgtctgaaaatgttggcgttcttcataacagttgattgtggctgctgttttatccgtctttcatcctcaagaatattgtgattg-------------
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ACGTGAAACTGGAATTATAGTTCCCATGGAGGATCCTATGACAATTCTTCAGAAAGGATATTCTTTTACAATAGTTTTAGCTGTTCTGGCATTCGGTTTGgtaatggttaatcttcatttgtgatattttaattttgcttttctatgctctctggtttggccaaccattcattgttccaattgctgtaatttttaaattgaattactttgtag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G24120.2 (Glycine max), 5'ss of exon 9
ACGTGACTCTGGAGTGAAGTCACCTGTCGAGGATCCAATGGCAATTCTTCAGAAAGGATACTCCATTACAATAATTTTAGCTGTTTTGACATTTGGCTTGgtaagatttcatctaccgtctgaaaatgttggcgttcttcataacagttgattgtggctgctgttttatccgtc-tttcatcctcaagaatattgtgattg-------------
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ACGTGAAACTGGAGTTATAGTTCCTGTGGAGGATCCAATGACAATTCTTCAGAAAGGATATTCTTTTACGATTGTTTTAGCTGTTCTGGCATTCGGTTTGgtaatatttaatcttcttttgtgatattttaattttgcttttctatactctctg-gattggtcaaccattcaccgttccaattgctgtaatttttaaattgaattactttgcag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 5'ss of exon 10
ACGTGACTCTGGAGTGAAGTCACCTGTCGAGGATCCAATGGCAATTCTTCAGAAAGGATACTCCATTACAATAATTTTAGCTGTTTTGACATTTGGCTTGgtaagatttcatctaccgtctgaaaatgttg-gcgttcttcataacagttgattgtggctgctgttttatccgtctttc--atcctcaagaatat-tgtgattg----------------------------------------------------------------------------------
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TCGCAATGCTAGTGTGAAATCTCCAGTAGAGGATCCAATGGTTGTTCTTCAGAAAGGATATTCGCTGACTATTATATTAGCTGTTTTGACATTTGGCGCGgtaa--tgtcattgattatttttgttcattatgtggttgtcg-agcagtagctttttgatgttatattgtcagttttatcgatagttgactttacatgcacataagggcccatctaagcaagtgaagctcttgatagtgctgtaatttcaatggaattcactgacaccattgcccctgttttgtag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G78920.1 (Arabidopsis thaliana), 5'ss of exon 9
ACGTGACTCTGGAGTGAAGTCACCTGTCGAGGATCCAATGGCAATTCTTCAGAAAGGATACTCCATTACAATAATTTTAGCTGTTTTGACATTTGGCTTGgtaagattt---catctaccgtctgaaaatgttggcgttct-----tcataacagttgattgtggct-------gctgttttatccg--tctttcat----cctcaagaatattgtgattg-----------------------------------------------------------
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ACGTGATGCTAGTGTGAAATCTCCGGTAGAGGATCCAATGGCTGTACTTCAGAAAGGATATTCTCTGACAATTATATTAGCTGTTATAACATTTGGCGCGgtaatgttgtcacacataaccattgattgtcttgttcctttcattctttttacaattaattctgctttttatgggctttttggttcagacttttcattagcctacactagccttgttattactgaaatttcgaacaaattctttgctatattcttctgacagcattatttatgtttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77580819|gb|DV219323.1|DV219323EST: AGAAAGGATACTCCATTACAATAATTTTAGCTGTTTTGACATTTGGCTTG TCTACCCGTTGGCTACTTTACACCGAACAAGCACCTTCTGCTTGGATGAAC
genomic: AGAAAGGATACTCCATTACAATAATTTTAGCTGTTTTGACATTTGGCTTGgtaagatttc ... acctttacagTCTACCCGTTGGCTACTTTACACCGAACAAGCACCTTCTGCTTGGATGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGTGACTCTGGAGTGAAGTCACCTGTCGAGGATCCAATGGCAATTCTTCAGAAAGGATACTCCATTACAATAATTTTAGCTGTTTTGACATTTGGCTTGgtaagatttcatctaccgtctgaaaatgttggcgttcttcataacagttgattgtggctgctgttttatccgtctttcatcctcaagaatattgtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaata