1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTCGGAGCACAAACTGAAACAGAACTTAAAGAAAAGAAATTGAGAGTGGAGGATGCCCTTAATGCAACAAAGgtactgtttaattaaacatgaccatcaatttagaaatactctgctttctccatttgttgcctcactgccctttgctcttgcatttaagttaaggtgtaactggttcaaaattttcaatattgttag
species | Vitis vinifera |
transcript | Vv09s0002g03930.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AACTTAAAGAAAAGAAACTGAGAGTGGAGGATGCCCTTAATGCAACAAAG GCAGCCGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGTEST: gi|71866122|gb|DT015177.1|DT015177
genomic: AACTTAAAGAAAAGAAATTGAGAGTGGAGGATGCCCTTAATGCAACAAAGgtactgttta ... atattgttagGCAGCCGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGT
EST: AACTTAAAGAAAAGAAACTGAGAGTGGAGGATGCCCTTAATGCAACAAAG GCAGCCGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGTEST: gi|37188483|gb|CF607832.1|CF607832
genomic: AACTTAAAGAAAAGAAATTGAGAGTGGAGGATGCCCTTAATGCAACAAAGgtactgttta ... atattgttagGCAGCCGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGT
EST: AACTTAAAGAAAAGAAACTGAGAGTGGAGGATGCCCTTAATGCAACAAAG GCAGCCGTTGAGGAAGGTEST: gi|77586832|gb|DV222559.1|DV222559
genomic: AACTTAAAGAAAAGAAATTGAGAGTGGAGGATGCCCTTAATGCAACAAAGgtactgttta ... atattgttagGCAGCCGTTGAGGAAGGT
EST: AACTTAAAGAAAAGAAACTGAGAGTGGAGGATGCCCTTAATGCAACAAAG GCAGCCGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGT
genomic: AACTTAAAGAAAAGAAATTGAGAGTGGAGGATGCCCTTAATGCAACAAAGgtactgttta ... atattgttagGCAGCCGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGGAGCACAAACTGAAACAGAACTTAAAGAAAAGAAATTGAGAGTGGAGGATGCCCTTAATGCAACAAAGgtactgtttaattaaacatgaccatcaatttagaaatactctgctttctccatttgttgcctcactgccctttgctcttgcatttaagttaaggtgtaactggttcaaaattttcaatattgttag
- - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG