1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCTTATGGAAACTTGCAGTTCGTGGGGCGCTGTATTGTAGATGTTTCTGCGTGAATGACAACGAATATGCAGATTGGCCATCTCTTCCCAATATGCCAGgtcttttatacacacacaagaagctcatgtattcatgttagaatctaggaatatatatttatattttgtaatttcaagttatgtggcacataatgtttac...
species | Vitis vinifera |
transcript | Vv09s0002g02690.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGTGAATGACAACGAATATGCAGATTGGCCATCTCTTCCCAATATGCCAG AAAATCTAATGGTGGATGGAAAGGCTCCTGAGGAGGAGATACTATCAGTGCEST: gi|34543088|gb|CF511320.1|CF511320
genomic: CGTGAATGACAACGAATATGCAGATTGGCCATCTCTTCCCAATATGCCAGgtcttttata ... ttccctccagAAAATCTAATGGTGGATGGAAAGGCTCCTGAGGAGGAGATACTATCAGTGC
EST: CGTGAATGACAACGAATATGCAGATTGGCCATCTCTTCCCAATATGCCAG AAAATCTAATGGTGGATGGAAAGGCTCCTGAGGAGGAGATACTATCAGTGCEST: gi|34543172|gb|CF511404.1|CF511404
genomic: CGTGAATGACAACGAATATGCAGATTGGCCATCTCTTCCCAATATGCCAGgtcttttata ... ttccctccagAAAATCTAATGGTGGATGGAAAGGCTCCTGAGGAGGAGATACTATCAGTGC
EST: CGTGAATGACAACGAATATGCAGATTGGCCATCTCTTCCCAATATGCCAG AAAATCTAATGGTGGATGGAAAGGCTCCTGAGGAGGAGATACTATCAGTGC
genomic: CGTGAATGACAACGAATATGCAGATTGGCCATCTCTTCCCAATATGCCAGgtcttttata ... ttccctccagAAAATCTAATGGTGGATGGAAAGGCTCCTGAGGAGGAGATACTATCAGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTATGGAAACTTGCAGTTCGTGGGGCGCTGTATTGTAGATGTTTCTGCGTGAATGACAACGAATATGCAGATTGGCCATCTCTTCCCAATATGCCAGgtcttttatacacacacaagaagctcatgtattcatgttagaatctaggaatatatatttatattttgtaatttcaagttatgtggcacataatgtttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaata