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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTAAATTTCTTCTAAAGCTCAAGGCGCCACGCATTGTTTACGTCTCATGTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtag

Basic information

species Vitis vinifera
transcript Vv09s0002g02670.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g09750.2 (Oryza sativa), 5'ss of exon 8
GATTAAATTTCTTCTAAAGCTCAAGGCGCCACGCATTGTTTACGTCTCATGTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatctgtcttctctattggcagttcttat--ctccatagcttcatcgtt-taagccggtgagaacttaatgtag-------------------
 || || |  || ||| |  | || || || || || || ||||| ||||||||||| || || |||||||| ||  | |||||| | |||||||||||||||||| | |||| | | |||||    | |  ||  || ||||   |  | ||| | ||    |    |||| |  ||                    
AATCAAGTGGCTACTAGAAGTTAAAGCCCCTCGAATAGTGTACGTTTCATGTAATCCAGCTACCTGTGCACGGGATTTGGATTACTTATGTCATGGTGTGgtatgtttttgtcctat-tattgaagatacccattacttcatattattttagttcttagtgcatagccacttcaattaaatacttaatttgtctacag

upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G02550.1 (Glycine max), 5'ss of exon 8
GATTAAATTTCTTCTAAAGCTCAAGGCGCCACGCATTGTTTACGTCTCATGTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtag
|||||| || |||||||| || | ||| || ||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  | |  | |||    | |  |   ||       |  ||  ||| ||| | | |    ||  || ||
GATTAAGTTCCTTCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGTAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtcattttattttat----attattaggctttgggattcaattatttgagctgttaaaggttttgtgcag

upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G42890.1 (Glycine max), 5'ss of exon 9
GATTAAATTTCTTCTAAAGCTCAAGGCGCCACGCATTGTTTACGTCTCATGTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtag
||||||||| || ||||| || | ||| || ||||| || || ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  | |  | |||    | |  |   ||       |  ||  ||| ||| | |||    ||  || ||
GATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtcattttattttat----attcttgggctttgagattcaattatttgagctgttgaaggttttgtgcag

upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G42890.2 (Glycine max), 5'ss of exon 9
GATTAAATTTCTTCTAAAGCTCAAGGCGCCACGCATTGTTTACGTCTCATGTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtag
||||||||| || ||||| || | ||| || ||||| || || ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  | |  | |||    | |  |   ||       |  ||  ||| ||| | |||             
GATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtcattttattttat----attcttgggctttgagattcaattatttgagctgttgaag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360458|gb|EC923573.1|EC923573
EST:     GTAATCCTGCCACATGTGCACGCGACCTCGATTACCTTTGTCATGGTGTG                         GTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTG
genomic: GTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatct ... cttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTG