1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATGgtgagttgaattccataaattaatacacttttacaactgaaaattaaactgaaaacaaccaagttgccttcaacattagtataccatttttaatttttgcagtgttttgatcttattctggttcctacaacag
species | Vitis vinifera |
transcript | Vv09s0002g02440.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATCTG TGAGCGATGAAGGTGAGAATTGGAGTGCCGGGCAACGCCAGCTCTTCTGTCEST: gi|110362756|gb|EC926308.1|EC926308
genomic: TCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATGgtgagttgaa ... cctacaacagTGAGCGATGAAGGTGAGAATTGGAGTGCCGGGCAACGCCAGCTCTTCTGTC
EST: TCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATG TGAGCGATGAAGGTGAGAATTGGAGTGCCGGGCAACGCCAGCTCTTCTGTCEST: gi|110381535|gb|EC934720.1|EC934720
genomic: TCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATGgtgagttgaa ... cctacaacagTGAGCGATGAAGGTGAGAATTGGAGTGCCGGGCAACGCCAGCTCTTCTGTC
EST: TCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATG TGAGCGATGAAGGTGAGAATTGGAGTGCCGGGCAACGCCAGCTCTTCTGTC
genomic: TCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATGgtgagttgaa ... cctacaacagTGAGCGATGAAGGTGAGAATTGGAGTGCCGGGCAACGCCAGCTCTTCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATGgtgagttgaattccataaattaatacacttttacaactgaaaattaaactgaaaacaaccaagttgccttcaacattagtataccatttttaatttttgcagtgttttgatcttattctggttcctacaacag
- - - - - - - TCAGCT