1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAAAACTATGCAGATATTGGATTGGTTCGAGAAAGTAGCCCATCTTATACTCCAGAGTCACAACAGCAGCAAGAACGTCATGTCTTACCGAGTTTTCCTgtgagtttagtccaatgattaatgattcttttattctatcctggttcttatgatgagacattctgacttgccatctgtttggtag
species | Vitis vinifera |
transcript | Vv09s0002g01530.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTCCAGAGTCACAACAGCAGCAAGAACGTCATGTCTTACCGAGTTTTCCT CATGCATATGATCCCCAGGCTGGTTATGATATTCCGTACTTCAGACCCACAEST: gi|30297212|gb|CB974006.1|CB974006
genomic: CTCCAGAGTCACAACAGCAGCAAGAACGTCATGTCTTACCGAGTTTTCCTgtgagtttag ... tgtttggtagCATGCATATGATCCCCAGGCTGGTTATGATATTCCGTACTTCAGACCCACA
EST: CTCCAGAGTCACAACAGCAGCAAGAACGTCATGTCTTACCGAGTTTTCCT CATGCATATGATCCCCAGGCTGGTTATGATATTCCGTACTTCAGACCCACA
genomic: CTCCAGAGTCACAACAGCAGCAAGAACGTCATGTCTTACCGAGTTTTCCTgtgagtttag ... tgtttggtagCATGCATATGATCCCCAGGCTGGTTATGATATTCCGTACTTCAGACCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAACTATGCAGATATTGGATTGGTTCGAGAAAGTAGCCCATCTTATACTCCAGAGTCACAACAGCAGCAAGAACGTCATGTCTTACCGAGTTTTCCTgtgagtttagtccaatgattaatgattcttttattctatcctggttcttatgatgagacattctgacttgccatctgtttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC