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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtctttgtatactctccattgatggttttggctgttattttgggttcttggtttttctcatattctttttccacattcag

Basic information

species Vitis vinifera
transcript Vv09s0002g00170.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 9
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaa-atacttatctgaagggcacgttgtctttgtatactctcca--ttgatggttttggctgttattttgg---------gttcttggtttt--tctcata---ttctttttccacattcag
||| |  | || || ||||| ||||| || ||  | ||||||||||||||| | ||||||||||| || ||  ||||||| || ||||| ||||||||||||||    |   |  |  |     |||| |   ||  | ||       ||| | ||| | |     |  |             | ||  | |||  ||||| |   | || ||| |   | |||
GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaagaactttgaaacttcgttctgggtggtttcttctagatttgtttgttatagtctccacctcaaaagcggataatgctaagctttgttctcacaaactcctgtttgctgttacag

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 9
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtctttgtatactctccattgatggttttggctgttattttgggttcttggtttttctcatattctttttccacattcag
|||||||| || |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |      ||| ||   |  | | |||| |||   | ||     || ||  ||    || | |   | | |   |||||     ||   ||||     ||   
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacaccttctaaa---cttggtatctt-gtactttttcttgatatagtcgtgtactttgtatgttgctttatattttttgaccatcaatttttttggtt---

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 9
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtctttgtatactctccattgatg-gttttggctgttattttgggttcttggtttttctcatattctttttccacattcag
|||||||| || |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || || ||||| | ||   |      ||||  ||||  || |      |  |||  ||   ||||  ||||  |||   || |         ||| ||| |||     | ||   
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaaga-acacctaaacttggcattttgtacttttccttgatatattcgtgtactttgtatgttgctttatattttga----ccatcaaattttttagtttcttt---

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 9
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtct-ttgtatactctccattgatggttttggctgttattttgggtt-cttggtttttctcatattctttttccacattcag
|||||||| || |||||||| ||||| ||||| |||||||||||||| || ||||||||||| ||||||||| ||||||| ||||||||||| || |||||||    || | |   ||    | |   | | |  | ||   |  | |  || |  |   | ||||   || || | |  || | ||  ||| ||| ||          
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtacgg-acattttcaaaaactaggcaatttataatttatcttgtacttttgatcatcaat-ttatcaaggatttcattattctgctagtatacttattggt-------

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 9
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtctttg-tatactctccattgatggttttggctgttattttgggttcttg-gtttttctcatattctttttccacattcag
|||||||| || |||||||| ||||| ||||| |||||||||||||| || |||||||| || ||||||||| ||||||| ||||||||||| || |||||||  |   |||| |  |      |   | | |  | ||   |  | |  || |  |   |  ||||  || ||      || | ||  ||| ||| ||          
GAGAGTAGGACGCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacattattttgaaactgggaaatttataatttatcttgtacttttgatcatcaat-ctattaaggatttcaacattctgctagtatacttattgg--------

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact-tatctgaagggcacgttgtctt-tgtatactctccattgatggttttggctgttattttgggttcttggtttttctcatattctttttccacattcag
|| || ||||| ||||| || ||||||||||| |||||||||||||| ||| | || ||||| || ||  |  | || ||  | ||||||||||| || |||||  |    |   |  | || |  | || || | |   |||||  |        || |  |||   |||  |  || |                             
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCGCGCTTATGCCCAAACTCGACCGgtaagttctcgtgcttatacggtagatggttttctctcctctctcggtaaccaagctttg--gtttgcttgaatctttag-----------------------------

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact-tatctgaagggcacgttgtctttgtatactctccattgatggttttggct--gttattttgggttcttggtttttctcatattctttttccacattcag
|| || ||||| ||||| || ||||||||||| |||||||||||||| ||| | || ||||| || ||  |  | |||||  | ||||||||||| || |||||  |    |   |  | || |  | || ||    |   |||  | | |      |  |  |||   |||  |  || |                             
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCTCGCTTATGCCCAAACTCGACCGgtaagttctcgtgcttatacggtagatggttttc---tctcctctctcggtaaccacgctttggtttgcttgaatctttag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781883|gb|FQ469180.1|FQ469180
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|22014898|gb|BQ799932.1|BQ799932
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|32247817|gb|CD713636.1|CD713636
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|110722901|gb|EE099603.1|EE099603
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|71877945|gb|DT027000.1|DT027000
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|33404512|gb|CF210139.1|CF210139
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|110391747|gb|EC956746.1|EC956746
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|32247872|gb|CD713691.1|CD713691
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|32246398|gb|CD712217.1|CD712217
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|32246414|gb|CD712233.1|CD712233
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|71878819|gb|DT027874.1|DT027874
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTG
EST: gi|46917703|gb|CN547032.1|CN547032
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|22013526|gb|BQ798560.1|BQ798560
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|110382613|gb|EC946924.1|EC946924
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|32272322|gb|CD721481.1|CD721481
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|110381975|gb|EC938156.1|EC938156
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
EST: gi|27586753|gb|CB009448.1|CB009448
EST:     GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTG                         GAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG
genomic: GAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatact ... ccacattcagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAG