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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTTTTGAATGGCGAGATGTGGTTGCTCGTGCTGAGGATGAAAGTACTGGTTATATATTGCCCAACAAAACTCTTCTTGAAATCGgtattgcttgtgccagttaatcaatttttcattttacttcttttgttcatactgaacttttatgctactttcactttttaaattaaaaag

Basic information

species Vitis vinifera
transcript Vv08s0056g01320.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os10g30100.1 (Oryza sativa), 5'ss of exon 10
GGCCTTTTTGAATGGCGAGATGTGGTTGCTCGTGCTGAGGATGAAAGTACTGGTTATATATTGCCCAACAAAACTCTTCTTGAAATCGgtattgcttgtgccagttaatcaatttttcattttacttcttttgttcatactgaacttttatgctactttcactttttaaattaaaaag
    | | | ||||| |||||   ||||||||||  |||||||| || ||||||||||||||||| || || || || ||||| || |||||||||  |  |  |  ||   || |     |  ||||  |||      || | | |||      |||||  || |  |  ||||   
AATATATATAAATGGAGAGATTCCGTTGCTCGTGGCGAGGATGAGAGCACTGGTTATATATTGCCGAATAAGACGCTGCTTGAGATAGgtattgctaatttcgatatattgcttatatgaatggcttcacttg-----gctaaccatttc-----ctttctgttctggatctaaag--

upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G118917_T01 (Zea mays), 5'ss of exon 10
GGCCTTTTTGAATGGCGAGATGTGGTTGCTCGTGCTGAGGATGAAAGTACTGGTTATATATTGCCCAACAAAACTCTTCTTGAAATCGgtattgcttgtgccagttaatcaatttttcattttacttcttttgttcatactgaacttttatgctactttcactttttaaattaaaaag
 | || | |  |||| ||||||   |||| |||||||||||||| || ||||| |||||||| ||||| || ||||| ||||| || ||| |   ||   | | || || |  | |   ||||  ||  |||  |   |    |  |||      | || | |||||    | | |  
AGTCTATATCGATGGAGAGATGGCATTGCCCGTGCTGAGGATGAGAGCACTGGCTATATATTACCCAATAAGACTCTACTTGAGATAGgttta--ttactcaacttgattagctgt--gttttttttgctttccttggataataactttgc----ccttgattttttgtgcttatag-

upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G24130.1 (Glycine max), 5'ss of exon 11
GGCCTTTTTGAATGGCGAGATGTGGTTGCTCGTGCTGAGGATGAAAGTACTGGTTATATATTGCCCAACAAAACTCTTCTTGAAATCGgtattg--cttgtgccagttaatcaatttttcattttacttcttttgtt-catactgaacttttatgctactttcactttttaaattaaaaag
|| || | ||||||| | ||  | ||||| ||||| |||||||||||||| || ||| ||||||| || ||| || ||||||||||||||||    ||||||| | ||       | || || |||    ||| | |  || || |   ||||   |   || |||| ||    |||||  
GGGCTGTGTGAATGGAGGGACATTGTTGCCCGTGCAGAGGATGAAAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaacttgtgcaaattctgtgtatcttaatattagcaatttggatgtatgctcataatttaatttgtatttacttgtt----taaaag-

upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G11200.1 (Glycine max), 5'ss of exon 4
GGCCTTTTTGAATGGCGAGATGTGGTTGCTCGTGCTGAGGATGAAAGTACTGGTTATATATTGCCCAACAAAACTCTTCTTGAAATCGgtattg--cttgtgccagttaatcaatttttcattttacttcttttgtt-catactgaacttttatgctactttcactttttaaattaaaaag
||  | | ||||||| | ||  | ||||| ||||| |||||||| ||||| || ||| ||||||| || ||| || ||||||||||||||||    ||  ||  | ||       | || || |||    ||| | |  || || |   ||||   |   || ||||     ||| |||||
GGGTTGTGTGAATGGAGGGACATTGTTGCCCGTGCAGAGGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaactcatgaaaattctgtgtatcttaatgttagcaatttggctgtatgctcagaatttaatttgtatttactt-----atttaaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161707863|gb|FC055659.1|FC055659
EST:     AAACTCTTCTTGAAATCG                         CC-AACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAA
genomic: AAACTCTTCTTGAAATCGgtattgcttg ... aattaaaaagCCAAACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAA