Sequence
atgc intronic sequence ATGC exonic sequenceTGGCGAAGATGAAATGGCATTTGACAACCTCTTCTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTTGCAAAGCGCGCTTCATATATGGAATTTAATgtaagtcatcccaacaaaccatattttatcccctgatttctaacatgtttgatgcttttggaattgcagaaaacgatttgagacttgtttgaaattgaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G29990.1 (Glycine max), 5'ss of exon 10
TGGCGAAGATGAAATGGCATTTGACAACCTCTTCTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTTGCAAAGCGCGCTTCATATATGGAATTTAATgtaagtcatcccaacaaaccatattttatcccctgatttctaacatgtttgatgcttttggaattgcagaaaacgatttgagacttgtttgaaattgaga
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TGAAGAAGATGAAATGGCATTTGATATCCTTTTTTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATgtaatgtattgt--taaattgtattt-gtccattgattaattatttttgttattatgtgacaatttccgtattc-atttataatttcttc----tttag-
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G00740.1 (Glycine max), 5'ss of exon 9
TGGCGAAGATGAAATGGCATTTGACAACCTCTTCTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTTGCAAAGCGCGCTTCATATATGGAATTTAATgtaagtcatcccaacaaaccatattttatcccctgattt-ctaacatgtttgatgcttttggaattgcagaaaacgatttgagacttgtttgaaattgaga
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TGAAGAGGATGAAATGGCATTTGATATCCTTTTTTGTGTAGCCTTTCAAATGATGGATGCTCAGTGGCTAGCCAAGCGTGCGACATATATGGAATTTAATgtaatgcatc--attaaattgtgttt-gtccattgcttagttatttttttttattatttgacaatttcctgattcatttttaatttttttcattag-----
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G03610.1 (Arabidopsis thaliana), 5'ss of exon 9
TGGCGAAGATGAAATGGCATTTGACAACCTCTTCTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTTGCAAAGCGCGCTTCATATATGGAATTTAATgtaa--gtcatcccaacaaaccatattttatcccctgatttctaacatgtttgatgcttt-tggaattgcagaaaacgatttgagacttgtttgaaattgaga--
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GGAAGAAGACGAAATGGCATTCGATAATCTCTACTGTATAGCTTTCCAAATGATGGATGCACAATGGCTTGCTAGACGAGCTTCTTACATGGAATTCAATgtaaatgtctttgaaccaagccttgttacaatttggaatttctgattcggttattaatctgttttctcggtggttatgcgttaaccggtttttgattttgggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30125837|gb|CB911176.1|CB911176EST: TGATGGATGCTCAGTGGCTTGCAAAGCGCGCTTCATATATGGAATTTAAT GATGTTCTAAAGTCTACCAGAACACAACTAGAGCGGGAGCTTGAGCTTGAA
genomic: TGATGGATGCTCAGTGGCTTGCAAAGCGCGCTTCATATATGGAATTTAATgtaagtcatc ... ttttccgtagGATGTTCTAAAGTCTACCAGAACACAACTAGAGCGGGAGCTTGAGCTTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGCGAAGATGAAATGGCATTTGACAACCTCTTCTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTTGCAAAGCGCGCTTCATATATGGAATTTAATgtaagtcatcccaacaaaccatattttatcccctgatttctaacatgtttgatgcttttggaattgcagaaaacgatttgagacttgtttgaaattgaga
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga