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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggtttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag

Basic information

species Vitis vinifera
transcript Vv08s0040g03050.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 10
TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggtttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag
  |  ||| |||||| | | ||||| |||||||| ||| |  ||||||| ||||||||||| |||||  | |||||  ||||||||||||||||| ||||||    |||  |||||     | | |||    | | |   |  | |   || || | | ||  || |   |   || |      | |   |     || ||                                 
CAAAGCATATGGATTTCCTGGGAGTTCAGGTGGCATGGGTGACTGGACCATGGTTTCTTTCAATTTTCATCAATATGCTTCCATGGGAAAGTGgtcaggttt----tatgcaatagcttggtgctttc----attaagatatatactcatacttatacatttgatgttcggtaccagtcccttaaattgaacgaaacatgc---------------------------------

upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 9
TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggtttgcattatataatagagcaatacattc-tgaaactgaatgaatttcctttaatttttctttgca--tctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag
  |  ||| |||| | ||| ||||| || ||||  |||||  ||||||| ||||||||||| |||||  | |||||  ||||||||||||||||| ||||||    |||| | |       | | ||| | |   |   ||   ||||  || ||||| || | |  || ||    | || |||   | |||   |                                         
CCAAACATATGGAATTCTTGGGAGTTCAAGTGGGATGGATAACTGGACCATGGTTTCTTTCAATTTTCATCAATATGCTTCCATGGGAAAGTGgtcaggttt----tatacagtgtcttggttctttcattatgatatgtgttattccaata-tttttgttggtagttcactgctgtaatattggttaatccccttct---------------------------------------

upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G095868_T03 (Zea mays), 5'ss of exon 9
TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggtttgcattatataatagagcaatacattc-tgaaactgaatgaatttcctttaatttttctt-tgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag
  |  ||| |||||| ||| | ||| || ||||  ||| |  ||||||| ||||| ||||| ||||| || |||||  ||||||||||||||||| ||||||    |||| | |       | | ||| | |   |   |    || |  || |||| ||  |   || ||    | |  |||   | |||   |                                         
CCAAACATATGGATTTCTTGGAAGTTCAAGTGGGATGGGTGACTGGACCATGGTTCCTTTCTATTTTCGTCAATATGCTTCCATGGGAAAGTGgtcaggttt----tatacagtgtcttggttctttcattatgatatgtactattacaatatttttgctagtagttcactgctgtaagattggttaatccctttct---------------------------------------

upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 10
TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggtttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag
||| ||||||||||| ||| |||||||||||||| ||||| |||||| |||||||||| || || ||||| || || ||||| ||||||||||||||| |||    ||   | |  | |  | | || | | | |  | | |||   ||| | |||| | |   |||  |   | || ||   |   | |  || |||| | ||                              
TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagattta---tacggagtgaatcttttc-ttttaatattaca-gcattgattttgaattttgtatat-tcttaaatgttatcttatgc---cttgtttctcaatcttag-----------------------------

upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G37290.2 (Arabidopsis thaliana), 5'ss of exon 8
-------TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggt-ttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag
       ||| ||||||||||| ||| ||||||||||| || ||||||||||| || ||||| || || |||||||| || |||||||| |||||| | |||||| | ||   |||| | | ||   |  ||||    |  ||  ||   ||||||||   | ||   || |  | ||  |||| | |      |  |    ||| ||                                  
GATGCAGTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaagga-aggacataggaagtctttat---tttccttt---tcttagctgaagttgtattttcaatcttgttgtttttga--gtccag----------------------------------

upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 9
TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggt-ttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag
||| ||||||||||| ||| ||||||||||| || ||||||||||| || ||||| || || |||||||| || |||||||| |||||| | |||||| | ||   |||| | | ||   |  ||||    |  ||  ||   ||||||||   | ||   || |  | ||  |||| | |      |  |    ||| ||                                  
TTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaagga-aggacataggaagtctttat---tttccttt---tcttagctgaagttgtattttcaatcttgttgtttttga--gtccag----------------------------------