1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATAATTTTATAGCAGCACTTGTAAAATGTTTGGGAAGTGAGCACCGGGTCTTGAAGAAGgtatattgtctgtcattattatcatgagattaatcatggtcacccattctcagtagaagcttatcatttatgtag
species | Vitis vinifera |
transcript | Vv08s0040g02290.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAGCAGCACTTGTAAAATGTTTGGGAAGTGAGCACCGGGTCTTGAAGAAG GAAGCAGCTTGGGTGCTATCCAATATAGCTGCTGGTTCCATTGAACACGAGEST: gi|110361396|gb|EC924864.1|EC924864
genomic: TAGCAGCACTTGTAAAATGTTTGGGAAGTGAGCACCGGGTCTTGAAGAAGgtatattgtc ... atttatgtagGAAGCAGCTTGGGTGCTATCCAATATAGCTGCTGGTTCCATTGAACACAAG
EST: TCTTGAAGAAG GAAGCAGCTTGGGTGCTATCCAATATAGCTGCTGGTTCCATTGAACACAAGEST: gi|351027685|gb|FQ446852.1|FQ446852
genomic: TCTTGAAGAAGgtatattgtc ... atttatgtagGAAGCAGCTTGGGTGCTATCCAATATAGCTGCTGGTTCCATTGAACACAAG
EST: TAGCAGCACTTGTAAAATGTTTGGGAAGTGAGCACCGGGTCTTGAAGAAG GAAGCAGCTTGGGTGCTATCCAATATAGCTGCTGGTTCCATTGAACACAAG
genomic: TAGCAGCACTTGTAAAATGTTTGGGAAGTGAGCACCGGGTCTTGAAGAAGgtatattgtc ... atttatgtagGAAGCAGCTTGGGTGCTATCCAATATAGCTGCTGGTTCCATTGAACACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAATTTTATAGCAGCACTTGTAAAATGTTTGGGAAGTGAGCACCGGGTCTTGAAGAAGgtatattgtctgtcattattatcatgagattaatcatggtcacccattctcagtagaagcttatcatttatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG