Sequence
atgc intronic sequence ATGC exonic sequenceTGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgattataaccttcatgattatcttttaatggatgtctgccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 10
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgattataaccttcatgattatcttttaatggatgtctgccag--------------
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TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaa-tcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 10
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgatta-taacct---tcatgattatctttt-------aatggatgtctgccag---
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TGGAAAGTATATTTTGACGGGGGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGGCACAACTCATGGgtaagttgcatgataa-tcttgactggacaaaaattttataccatgagtaataaattagtttgaggtgagattttgcacaacagtaaggttttgctatctt
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G36480.2 (Glycine max), 5'ss of exon 4
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgattataaccttcatgat-tatcttttaatggatgtc--tgccag
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TGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGgtaagttgtgtgttaattttttg-tcatgtgcttgtagcaaactttgctaccacaggactgatgtagtttgtgtcaaatgctgtgatcag
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G33740.2 (Glycine max), 5'ss of exon 9
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgatta---taaccttcatgattatcttttaatggatgtct--gccag---------
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TGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGCGAGGGACATAACTCATGGgtaagttgcctgacaatt-tttagttgtgtgcttgtagcaaactttgctaccgtagggttaatgtagtgtttgtatcaaatgccatgatcaggtcagtgga
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 9
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgatta---taaccttcatgattatcttttaatggatgtc--tgccag
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TGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGCGAGGGACATAACTCATGGgtaagttgcctgacaatt-tttagttgtgtgcttgtagcaaactttgctaccgtagggttaatgtagtgtttgtatcaaatgccatgatcag
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 9
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttcta---tcaaatgtc-tgcttgtcata-atttcatagacatgattataaccttcatgattatcttttaatggatgtctgccag
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-----AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttcttaaattggagtatagtgaattacgtatgtaagacaaacactact-tgacttatgtgaaagcttcctcataggtaag------
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 9
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgattataaccttcatgattatcttttaatggatgtctgccag
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TGGAAAGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGgtaag-gttct--taaattggagtatagtg-aattacgtatgtaagacaaacac-tacttgact--tatgtgaaagcttcctcatag
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 9
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgattataaccttcatgattatcttttaatggatgtctgccag
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TGGAAAGTACATTTTGACTGGAGGTGAAGATGATTTAGTTCAAGTGTGGAGTATGGAGGATCGGAAAGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGgtaag-gttctt---gatgtcaataagatttcttttatttaactta--cacagcacttg-actcatgtcggaatggttg-ctctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30301922|gb|CB978716.1|CB978716EST: GTATGGAAGACCGGAAGGTTGTGGCATGGGGTGAGGGACACAATTCTTGG GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGC
genomic: GTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttc ... tgtctgccagGTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgattataaccttcatgattatcttttaatggatgtctgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA