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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttttcctttcaaaatttcatcaagaatttaactagcggttactgagaattggtttcaatctgatacatttttctaactgattatgggtctgcttttctttataag

Basic information

species Vitis vinifera
transcript Vv08s0040g01040.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033160|gb|FQ461932.1|FQ461932
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|37188456|gb|CF607805.1|CF607805
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|349827848|gb|FQ422716.1|FQ422716
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|77583953|gb|DV221017.1|DV221017
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351043304|gb|FQ444025.1|FQ444025
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351056246|gb|FQ453708.1|FQ453708
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351055541|gb|FQ442337.1|FQ442337
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|110709191|gb|EE084434.1|EE084434
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|34545450|gb|CF513682.1|CF513682
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGCCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|37189567|gb|CF608916.1|CF608916
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATC
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATC
EST: gi|110707772|gb|EE084549.1|EE084549
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351053966|gb|FQ441732.1|FQ441732
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|77583880|gb|DV220977.1|DV220977
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|71875979|gb|DT025034.1|DT025034
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|110707915|gb|EE084860.1|EE084860
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|349815813|gb|FQ400978.1|FQ400978
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|352789896|gb|FQ478711.1|FQ478711
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351040753|gb|FQ438297.1|FQ438297
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|71873082|gb|DT022137.1|DT022137
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|349826160|gb|FQ415965.1|FQ415965
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351041354|gb|FQ447481.1|FQ447481
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351040299|gb|FQ425385.1|FQ425385
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|77577309|gb|DV217367.1|DV217367
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351016501|gb|FQ423928.1|FQ423928
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|349828939|gb|FQ419272.1|FQ419272
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|349824039|gb|FQ417426.1|FQ417426
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351023398|gb|FQ432781.1|FQ432781
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|77580683|gb|DV219246.1|DV219246
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|77578243|gb|DV217899.1|DV217899
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|71876799|gb|DT025854.1|DT025854
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
EST: gi|351022732|gb|FQ428641.1|FQ428641
EST:     TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAG                         CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT
genomic: TTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGgttttttttt ... tctttataagCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAAT