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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag

Basic information

species Vitis vinifera
transcript Vv08s0040g00320.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g20420.3 (Oryza sativa), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
||   | || ||||| || ||||| ||||||||||| ||||||  |||||||||||| || ||||||||||||||||| || | ||||||||||||||||||| |||   | | || |          ||     |      | |  | | |||| |  |  |          |   | || | ||  ||   |||||  ||  |||||
GAGTGAAACCATTGGACCTTGGGAAGAGAGACCTGGTCACTTTAATGATGTTTGGAATTATTGGACTGATGATGGACTAGGCTTTTTTGAGTTCCTTCAAgtaagtaaaatgctccagcttggctcagaa----ctgaaagcagccaaataattgcatcaacta--------accattaagctgatacacgt-tgtttcattattgtag

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagat-tttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgt-ttctgtag-----
||   |  | ||||| || ||||| ||||| |||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||| |||||| || || |||    | |        | | ||  |       |||  ||||  ||   | ||  || | |  |  ||| || ||  ||   |   | |  ||   ||||   |||  |      
GAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTGGCATTACTGGACTGATGATGGCCTTGGATATTATGAGTTTCTCCAGgtaccagtttagttgacattatttccgcccttcattttcttatcactccctaatcatatattgcctttga-attctatttttttttctaatgaaaaatttgaactctacatcaaag

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagat-tttatttatatcttagtgattgtacaatttccatgagatgc-tgcttaggtaatttacaaatgttttgtttctgtag-----
||   |  | ||||| || ||||| ||||| |||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||| ||| || || || |||    | | |      | | |  ||       |||  ||||  | |  | ||  || | |  |  |||| |   |  ||   ||||    |||  |||    ||   |      
GAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTGGCATTACTGGACTGATGATGGCCTTGGATATTATGAATTTCTCCAGgtactagtttacttgacattattcctgcctttcattttcttatcacgtcctaatcatatattgcctttgagttctatatttttctaatg---aaaactttgaactccacatcaaag

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os12g03480.1 (Oryza sativa), 5'ss of exon 6
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|||  | || ||||| || ||||| |||||||||||||||| ||| ||||| ||| | |||||||| |||||||| ||||| |||| |||||| ||  | |||||  |        ||   | |||||||    || ||| |   || ||    | | |  |  |      |     | |     || |  || |              
GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGACGGATGATGGCCTTGGGTATTATGAGTTACTCGAGgtatgggt--------tgattaatgtgaaatgggttttttct--tttggtctcggcatatctcaccatttgtttacttcaaaatgttcatgaaag--------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g03780.2 (Oryza sativa), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgt--acaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
||   | || ||||| ||||||||  |||||||||| |||||||| ||||||||||| || ||||| |||||||| || || ||||  ||||| || || || | | |     |  || ||  ||   |   |||| |||  ||||       | |  |||  |   | || ||  | ||   | ||||| ||                  
GAGGGAAACTATTGGTCCCTGGGAACAGAGACCTGGGCACTTTGGAGATGTTTGGAATTATTGGACCGATGATGGCCTAGGATATTACGAGTTTCTCCAGgtgtatgttagttaa-tgccatctg---agtgtttttttttcatctcttctgctatcaacatatctaacgaaatatttctaccgaaattttcatggaaag-----------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g03734.1 (Oryza sativa), 5'ss of exon 6
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttag-tgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|||  | || ||||| || ||||| ||||||||||| |||| ||| ||||||||| | |||||||| |||||||| ||||| |||| ||| || || || ||||| ||     |  |||||| || |     | ||  |   ||| ||  ||||  |    || |   ||    ||| | | ||  || | ||||   ||| |   |   
GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGGCACTATGGAGATGTTTGGCACTACTGGACCGATGATGGCCTTGGGTATTATGACTTTCTCCAGgtatggattgattaa-tgtcaaatgagttctctcttggtctcatcatatctgatcatttgtttacttcgaa---ctgttcatgtc-ttcataaat--cttgctgaag---

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os07g48750.1 (Oryza sativa), 5'ss of exon 9
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
||   | ||  | || || |||||||| ||||| || |||||   |||||  |||   ||||||||||||||||||||||| |  |||||||||||||| |||  |       |       | | | |||  |  ||||||| |   |   | |  | || |||       || |  | |  || |  |                    
GAGTGAAACTGTGGGTCCATGGGAGGAAAGACCCGGTCACTTCAATGATGCCTGGGGATACTGGACTGATGATGGACTTGGATTCTTTGAGTTCCTTCAGgtaattggaacgtagtccatgact-tcaaaactaatatttat-taaaatatacttcataagttc---atattgatattcatatactgcag-------------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G006130_T03 (Zea mays), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|| | || ||||||| || ||||| ||||| ||||||||||| || ||||||||| | ||||||||||||||||| ||||| |||| |||||||||||| |||    | | |      ||| ||     |  |||  ||  |||| |      |    |  ||  ||   |  || | |    |  || |  | |   ||  |      
GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagtttacactgcttcactttatttatttttctttcctatcatgacccctaagta--ttatattgaaatctacgtcaa-agcttgcggaggacctgggt------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G006130_T02 (Zea mays), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|| | |  ||||||| || ||||| ||||| ||||||||||| || ||||||||| | ||||||||||||||||| ||||| |||| |||||||||||| |||    | | |      ||| ||     |  |||  ||  |||| |         |  |||    ||| || || | |                              
GAGAGAATCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagtttacactgcttcactttatttatttttctttcctatcatgaccccctaagtattatattgaaat-ctacgtcaaag-------------------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|| | || ||||||| || ||||| ||||| ||||||||||| || ||||||||| | ||||||||||||||||| ||||| |||| |||||||||||| |||    | | |      ||| ||     |  |||  ||  |||| |      |    |  ||  ||   |  || | |                              
GAGAGAGTCAATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGGCTTGGATATTATGAGTTCCTTCAGgtaccagtttacactgcttcactttatttatttttctttcctatcatgacccctaagta--ttatattgaaatctacgtcaaag-------------------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G077299_T01 (Zea mays), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|| | |  | ||||| || ||||| ||||||||||||||||| || ||||||||| | ||||||||||||||||| ||||| || | ||| || ||||| ||    |  ||  ||   |    |||   || |||  ||     | |  || |      | |  ||  |  |    || |  |      ||||                
GAGAGAATCTATTGGTCCATGGGAAGAGAGACCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAGgtgc-cagtttatactgctt--ctgttcgagctttccttc----cctgttggtgtcctcactgacaacaattaactctgaaatctacatcaaag---------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G097277_T01 (Zea mays), 5'ss of exon 7
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatct--tccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
||   ||||  | || || ||||||||||||||||| ||||||  |||||  |||   ||||||||||||||||| ||||| | ||||||||||||||| ||||    ||  |  |      | | |   ||||||||||  |  || ||   | | |   |    | ||   || |   |||                            
GAGTGAGACTGTGGGACCATGGGAGGAGAGACCTGGTCACTTTAATGATGCCTGGGGATACTGGACTGATGATGGGCTTGGATTTTTTGAGTTCCTTCAGgtatactgctatttgatacagtactggcctaagattttatcaaactcatatatactttggtaccgacttgccttgat-tatag----------------------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G30450.1 (Glycine max), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatct-tccacctgt----caattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag--------
||||    | ||||| || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |||||| ||  || |  || | |     |  |  | |  ||  | ||  |||||    || | |||  |     ||  |||||  | |  | || || | |  | || ||    |          
GAAAACATCCATTGGACCATGGGAGGAGAGACCTGGGCACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGTTATTATGAGTTTCTCCAAgtaagtgcctctttacatatattgtagcttaggattatgatgttcgtatctagtcgaat-tactctagttgtgctatgctagtgaaatgatatatataattattattataatttttgagcag

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G27460.3 (Glycine max), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatct---tccacctgtc--aattgtgaaagattttatttatatcttagtga-ttgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag--------
||||    |  |||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| || |||||| ||  ||   | ||  | |   |  || | || ||  | || ||||||   ||| ||   |   ||   ||  |||||  | |  | || || |    | || ||  | |          
GAAAGCATCTGTTGGACCATGGGAGGAGAGACCTGGGCACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGCTATTATGAGTTTCTCCAAgtaagtgcctcttttcatatattgtagctgaggaatatgatgttcatatctagttgaattactcttgttttgtgctatgctagtgaaatgatatatattattattattattatttttgagcag

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G30460.1 (Glycine max), 5'ss of exon 7
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|||| | || ||||| || ||||||||||||||||| ||| |||||||||||||||| || |||| |||||||||| |||||| ||||||||  || |  ||  ||||  |     |  ||| | | |   | ||| |      || | | | | ||  ||    ||   ||  | |||  | |                         
GAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtgagtattctt----ttacaactataattaaatttgtcctg--ctgaataaatataatatg---atttaatatttcttgagcag------------------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G27490.1 (Glycine max), 5'ss of exon 7
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|||| | |   |||| |||||||| ||||||||||| |||||||||||||||||||  || ||||| ||||| ||| ||||||||||||||   ||||||||| ||   ||     ||  ||   | | |  |||| ||  |||  |    |||   ||||    || ||    |  ||  ||   |                      
GAAAGATAGTGTTGGACCCTGGGAAGAGAGACCTGGTCACTTTGGTGATGTTTGGAGTTATTGGACAGATGAAGGATTTGGTTATTTTGAGGGTCTTCAAgtaagtccatttattatgataacaatcaca--ttttgttgttattgtga-aatt---caatcataataagccattttttgtgtgtgtag--------------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G30470.1 (Glycine max), 5'ss of exon 7
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|||| | | | |||| ||||||||  |||||||||| |||||||||||||||||||  || ||||| ||||| ||| ||||||||||||||   ||||||||| |||  ||          ||| ||| |      | | | || ||  ||         ||    ||| || |      |  ||   |    | |||||| | |||||
GAAAGATAGAGTTGGACCCTGGGAACAGAGACCTGGGCACTTTGGTGATGTTTGGAGCTATTGGACAGATGAAGGATTTGGTTATTTTGAGGGTCTTCAAgtaagtacattt---------attatgataa----caatcacattttgttg---------ttattgtgaaattcaatcatgacaagccattttttttttgtgtgtgtag

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G26120.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgt-atcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|||| | ||  |  |  | ||||| ||||||||||| || | ||||||||||||||||||||||||||||||||| |||||  | ||||| ||| |||||||| |  || ||   | | ||  || |  |    ||||    | | | | | |||    |  |   |  | ||  | |||  |||                         
GAAAGAAACCGTGAGAGCTTGGGAAGAGAGACCTGGCCATTATGGTGATGTTTGGAAGTACTGGACTGATGATGGCCTTGGCCACTTTGAATTCTTTCAAgtaagggatttttttcttttcggttctatatccatttaaa-gtgtttcaataattactaagctcgaaacaaatatttctt--gtag------------------------

upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G10740.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttat-atcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag
|||| | ||  | || || ||||| |||||||| || || |||||||||||||||||||| ||||| |||||||| |||||  | ||||||||| |||||||  |   ||||  | | || |||| | |     | ||     |   | || |||| | |  ||  |||| |   |  |   |                           
GAAAGAAACCGTAGGACCTTGGGAAGAGAGACCGGGCCATTTTGGTGATGTTTGGAAGTATTGGACCGATGATGGCCTTGGCCACTTTGAGTTCTTTCAAgtgaga--cttcttcttttctattgagtacataatgatccccgaagctcgttattgaata--ttaaatga-acattcttgcag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406071|gb|CF211698.1|CF211698
EST:     GGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAA                         CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG
genomic: GGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatct ... gtttctgtagCTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG
EST: gi|161713110|gb|FC062474.1|FC062474
EST:     TTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAA                         CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG
genomic: TTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatct ... gtttctgtagCTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG
EST: gi|161713404|gb|FC062796.1|FC062796
EST:     TTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAA                         CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG
genomic: TTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatct ... gtttctgtagCTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA