Sequence
atgc intronic sequence ATGC exonic sequenceTGCCAGGCTGGGATCAACCTCCATGGCTGCATTCCAGGTTTGTTTGCAGATCTGGCTGGCAACCTCTTTGCTTGCTGATGGGTTGGCTGTCGCTGGACAAgtaagaaatggatcttctactcgaatgtagtaacccggatatacaattttaaaactaacctagaccaactcctgacctttatcgagaagccagtgttaag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08200.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 5'ss of exon 8
TGCCAGGCTGGGATCAACCTCCATGGCTGCATTCCAGGTTTGTTTGCAGATCTGGCTGGCAACCTCTTTGCTTGCTGATGGGTTGGCTGTCGCTGGACAAgtaagaaatggatcttctactcgaatgtagtaacccggatatacaattttaaaactaacctagaccaactcctgacctttatcgagaagccagtgttaag---------
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TGCACGGCTAGGTTCAGTTCCAATGGCTGCATTTCAGATTTGCTTGCAGATCTGGCTGGCTTCGTCTCTTCTTGCTGATGGATTGGCTTTTGCAGGACAGgtaagggaacagttgtctccactcactc--caatgctga----caatactgaaggtttct---attgaaccttcattttaatgaaaaattctacctcagtaactgcacc
upper sequence: Vv08s0007g08200.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G31370.1 (Glycine max), 5'ss of exon 9
TGCCAGGCTGGGATCAACCTCCATGGCTGCATTCCAGGTTTGTTTGCAGATCTGGCTGGCAACCTCTTTGCTTGCTGATGGGTTGGCTGTCGCTGGACAAgtaagaaatggatcttctactcgaatgtagtaacccggatatacaattttaaaactaacctagaccaactcctgacctttatcgagaagccagtgttaag----
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AGCAAGGAAAGGATCAACAACAATGGCTGCATTTCAAATCTGCTTACAGATTTGGATGGCAACCTCTTTGCTTGCTGATGGATTGGCTGTTGCGGGACAAgtaagaaattgattcttgatcaaaatatagttttttcaacctgcatggttggaatgaa----gaatttctatttgttgtcaagtggaaatattttttaatatat
upper sequence: Vv08s0007g08200.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G21860.1 (Glycine max), 5'ss of exon 10
TGCCAGGCTGGGATCAACCTCCATGGCTGCATTCCAGGTTTGTTTGCAGATCTGGCTGGCAACCTCTTTGCTTGCTGATGGGTTGGCTGTCGCTGGACAAgtaagaaatggatcttctactcgaatgtagtaacccggatatacaattttaaaactaacctagaccaactcctgacctttatcgag--aagccagtgttaag-----
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AGCAAGGAAAGGATCAACAACAATGGCTGCATTTCAAATCTGCTTACAGATTTGGATGGCGACCTCTTTGCTTGCTGATGGATTGGCTGTTGCGGCACAAgtaagaaattgattcttgatcaaaatataactttttcaacctacatggttggaatgaag-------aatttctatttgttgtcaagtgaaaatattttttaatatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110418727|gb|EC984898.1|EC984898EST: TCTGGCTGGCAACCTCTTTGCTTGCTGATGGGTTGGCTGTCGCTGGACAA GCAATCCTTGCAAGTGCATTTGCCAAAAAGGATTATGACAAGGCAACTGCT
genomic: TCTGGCTGGCAACCTCTTTGCTTGCTGATGGGTTGGCTGTCGCTGGACAAgtaagaaatg ... cattttctagGCAATCCTTGCAAGTGCATTTGCCAAAAAGGATTATGACAAGGCAACTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCCAGGCTGGGATCAACCTCCATGGCTGCATTCCAGGTTTGTTTGCAGATCTGGCTGGCAACCTCTTTGCTTGCTGATGGGTTGGCTGTCGCTGGACAAgtaagaaatggatcttctactcgaatgtagtaacccggatatacaattttaaaactaacctagaccaactcctgacctttatcgagaagccagtgttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa