Sequence
atgc intronic sequence ATGC exonic sequenceTGGAGAGGCTGCAGTCATAGCTGGCAGAGTCTTCTCTCCTTCTGTAGTTCCTGGCATGCAATGGAGGCCAGGAAGTTCCTTTCAGAATCAAAATGAATCGgtatgcctcttagttctactttccactttagctcgtttttatgtggtatttgctttatgcttttaaagcaaatgtgaattatttgctacttttagaaact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G28580.2 (Glycine max), 5'ss of exon 6
TGGAGAGGCTGCAGTCATAGCTGGCAGAGTCTTCTCTCCTTCTGTAGTTCCTGGCATGCAATGGAGGCCAGGAAGTTCCTTTCAGAATCAAAATGAATCGgtatgcc-----tcttagttctactttccactttagctcgtttttatgtggtatttgctttat--gcttttaaagc---aaatgtgaattatttgctacttttagaaact
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TACTGTTAATGAAGCAGCATCTGGGAGAGTTTTCTCCCCTTCTGGGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCAgtaagttttctgtcctaagttttcttttgctttgctattacttttccgctatgttcattttggtgatttttggaacctgaagtgtgaactgttagttagt----------
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G04690.1 (Glycine max), 5'ss of exon 10
TGGAGAGGCTGCAGTCATAGCTGGCAGAGTCTTCTCTCCTTCTGTAGTTCCTGGCATGCAATGGAGGCCAGGAAGTTCCTTTCAGAATCAAAATGAATCGgtatgcctc--ttagttctact-ttccactttagctcgtttttatgtggtatttgctttatgcttttaaagcaaatgtgaattatttgctacttttagaaact
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TACTGTTAATGAAGCCGCAGCCGGGAGAGTTTTCTCCCCTTCTGGGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCAgtaagttttcttttgctttgctattattttttcgctatgttcgttttggtgatttttggaacctgaagtgtcaaccgttggttagttactccctccaaaa---
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 10
TGGAGAGGCTGCAGTCATAGCTGGCAGAGTCTTCTCTCCTTCTGTAGTTCCTGGCATGCAATGGAGGCCAGGAAGTTCCTTTCAGAATCAAAATGAATCGgtatgcctcttagttctactttccactt--tagctcgttt-ttatgtggtatttgctttatgcttttaaagcaaatgtgaattatttgctacttttagaaact
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CAACGAAGCTGCAACTGTATCTGGGAGAGTTTTCTCCCCTTCTGCTGTTCCTGGCATGCAATGGAGACCTGGAAGCCCCTTCCAGAATCAGAATGATGTGgtacaatttttctcttgaattttcatttgctattccacctgccacattgctgttgttgatttgttgtatttgaagtatgagctgttggttacttttgttc---
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G26850.1 (Glycine max), 5'ss of exon 11
TGGAGAGGCTGCAGTCATAGCTGGCAGAGTCTTCTCTCCTTCTGTAGTTCCTGGCATGCAATGGAGGCCAGGAAGTTCCTTTCAGAATCAAAATGAATCGgtatgcctcttagttctactttccactttagctcgtttttatgtggtatttgctttatgcttttaaagcaaatgtgaattatttgctacttttagaaact--
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CAACGAAGCTGCAACTGTATCTGGGAGAGTGTTCTCCCCTTCTGCTGTTCCTGGCATGCAATGGAGATCTGGAAGCCCCTTCCAGAATCAGAATGATGTGgtacactttttctcttgaattttcatttgctattgttgatttgttgtatttgaagtatgagctgttggttactttg--ttctccaattatgttatgcattctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161711208|gb|FC061175.1|FC061175EST: CTGGCATGCAATGGAGGCCAGGAAGTTCCTTTCAGAATCAAAATGAATCG GGACAGTTTCGGGGAAGAACTGAAATTACACTTGATC
genomic: CTGGCATGCAATGGAGGCCAGGAAGTTCCTTTCAGAATCAAAATGAATCGgtatgcctct ... gcattttcagGGACAGTTTCGGGGAAGAACTGAAATTACACTTGATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAGAGGCTGCAGTCATAGCTGGCAGAGTCTTCTCTCCTTCTGTAGTTCCTGGCATGCAATGGAGGCCAGGAAGTTCCTTTCAGAATCAAAATGAATCGgtatgcctcttagttctactttccactttagctcgtttttatgtggtatttgctttatgcttttaaagcaaatgtgaattatttgctacttttagaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa