1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAAAATGCAAATGAAATTAAAGCCAAATTTATTATTGAAGCAGCCAACCATCCTACAGACCCTGAAGCAGATGAGgttagtgcaaactttgaaatttagagttctgaaaaaaaaaaaaaaaactgcaatgccataactgttgtattctcttgcag
species | Vitis vinifera |
transcript | Vv08s0007g07400.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AATTTATTATTGAAGCAGCCAACCATCCAACAGACCCTGAAGCAGATGAG ATCCTATCAAAGAAAGGTGTTATCATTCTTCCAGACATATATGCAAACTCGEST: gi|33404831|gb|CF210458.1|CF210458
genomic: AATTTATTATTGAAGCAGCCAACCATCCTACAGACCCTGAAGCAGATGAGgttagtgcaa ... tctcttgcagATCCTATCAAAGAAAGGTGTTGTCATTCTTCCAGACATATATGCAAACTCG
EST: AATTTATTATTGAAGCAGCCAACCATCCTACAGACCCTGAAGCAGATGAG ATCCTATCAAAGAAAGGTGTTGTCATTCTTCCAGACATATATGCAAACTCGEST: gi|33404746|gb|CF210373.1|CF210373
genomic: AATTTATTATTGAAGCAGCCAACCATCCTACAGACCCTGAAGCAGATGAGgttagtgcaa ... tctcttgcagATCCTATCAAAGAAAGGTGTTGTCATTCTTCCAGACATATATGCAAACTCG
EST: AATTTATTATTGAAGCAGCCAACCATCCTACAGACCCTGAAGCAGATGAG ATCCTATCAAAGAAAGGTGTTGTCATTCTTCCAGACATATATGCAAACTCGEST: gi|110428368|gb|EC994837.1|EC994837
genomic: AATTTATTATTGAAGCAGCCAACCATCCTACAGACCCTGAAGCAGATGAGgttagtgcaa ... tctcttgcagATCCTATCAAAGAAAGGTGTTGTCATTCTTCCAGACATATATGCAAACTCG
EST: AATTTATTATTGAAGCAGCCAACCATCCAACAGACCCTGAAGCAGATGAG ATCCTATCAAAGAAAGGTGTTATCATTCTTCCAGACATATATGCAAACTCG
genomic: AATTTATTATTGAAGCAGCCAACCATCCTACAGACCCTGAAGCAGATGAGgttagtgcaa ... tctcttgcagATCCTATCAAAGAAAGGTGTTGTCATTCTTCCAGACATATATGCAAACTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAATGCAAATGAAATTAAAGCCAAATTTATTATTGAAGCAGCCAACCATCCTACAGACCCTGAAGCAGATGAGgttagtgcaaactttgaaatttagagttctgaaaaaaaaaaaaaaaactgcaatgccataactgttgtattctcttgcag
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG