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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTGCTTCAATTTCTCTAACATACATTGCCTCAGAACGGATCATTCCTGGgtatacctctgctttcctgatttgctcaactggcttatgattcttgcaacaaactattttaggggaatcttaacttttgaatttcacatgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g06390.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 8
GGGGTGCTTCAATTTCTCTAACATACATTGCCTCAGAACGGATCATTCCTGGgtatacctc-tgctttcctgatttgctcaactggctta--tgattcttgcaacaaactattttaggggaatctta-acttttgaatttcac---atgcag
| ||||||||||| ||||| || ||||||||||| ||| | ||||||||||||||    |      |||   | ||  ||||  |    |  | || |   ||   ||| || | |    | ||| | |  | |   |||||     |||||
GAGGTGCTTCAATATCTCTTACTTACATTGCCTCTGAAAGAATCATTCCTGGgtaaggatggcttcttcacaagttattcaaaggaacaaactaatgcacacacataacgatgtcaacacattctcacaagtatctctttcattctgtgcag