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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAGgtagctttatatgcagtgtcatgcttgaggaattcttactagcatcttctgtgaaatttttcaatgatattttacatttactttttcag

Basic information

species Vitis vinifera
transcript Vv08s0007g05920.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156736397|gb|EV240511.1|EV240511
EST:     CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG                         GTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
genomic: CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAGgtagctttat ... actttttcagGTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
EST: gi|33405215|gb|CF210842.1|CF210842
EST:     CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG                         GTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
genomic: CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAGgtagctttat ... actttttcagGTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
EST: gi|33405130|gb|CF210757.1|CF210757
EST:     CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG                         GTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
genomic: CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAGgtagctttat ... actttttcagGTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
EST: gi|349825767|gb|FQ421866.1|FQ421866
EST:     CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG                         GTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
genomic: CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAGgtagctttat ... actttttcagGTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
EST: gi|22010048|gb|BQ795082.1|BQ795082
EST:     CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG                         GTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
genomic: CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAGgtagctttat ... actttttcagGTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
EST: gi|110377471|gb|EC942537.1|EC942537
EST:     CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG                         GTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT
genomic: CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAGgtagctttat ... actttttcagGTTTGACCCGCAGACAGGGCTACTGACTGGAACAAATGATGGGACTGTTGT