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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTGTGGCATCTTGGGGGGCACTGTTGGAGGTCTGTTGGGTTCGGGTGGTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgactttgatgggtatctctaattgcaatggcctgtccaacctttgtacctgaacttagattacctgttataagaatcagaatttactactttctttgtcattctccgctaaaacacttacgatattataaaggaatgaataactgttggctttcacag

Basic information

species Vitis vinifera
transcript Vv08s0007g04230.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110727350|gb|EE104013.1|EE104013
EST:     TGGATTCCA-ACTGGGTCCACTCCTTCTTGAGATTGGTGTCACCCCCCAG                         GTTGCA-GCGCGACAGCAACTTTTG
genomic: TGGATTC-ATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTG
EST: gi|30137128|gb|CB922466.1|CB922466
EST:     GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|110718237|gb|EE094838.1|EE094838
EST:     GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|30127341|gb|CB912680.1|CB912680
EST:     GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|110716984|gb|EE092443.1|EE092443
EST:     CTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: CTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|110720724|gb|EE096897.1|EE096897
EST:     GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|110714603|gb|EE091700.1|EE091700
EST:     GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|30130563|gb|CB915902.1|CB915902
EST:     GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|110382176|gb|EC938689.1|EC938689
EST:     GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|110716151|gb|EE090882.1|EE090882
EST:     GTGGATTCATACTGGGTCCACTCCTTCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: gi|71888381|gb|DT037436.1|DT037436
EST:     GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG                         GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCTGTGGCATCTTGGGGGGCACTGTTGGAGGTCTGTTGGGTTCGGGTGGTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgactttgatgggtatctctaattgcaatggcctgtccaacctttgtacctgaacttagattacctgttataagaatcagaatttactactttctttgtcattctccgctaaaacacttacgatattataaaggaatgaataactgttggctttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC