Sequence
atgc intronic sequence ATGC exonic sequenceATGGGATATCATTGCGGAGAGATTGGGCTTCATGTTGGTGTTTGGGGATCTAGTGTGGATCCCTTTTACTTTTAGCATCCAGgcaggaaactatgactatgcctttaacttagattacatgaaagaattgtctccttatggattctttttaattttgttacttcaatttgtgcttagatgta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G07580.1 (Glycine max), 5'ss of exon 1
------------------ATGGGATATCATTGCGGAGAGATTGGGCTTCATGTTGGTGTTTGGGGATCTAGTGTGGATCCCTTTTACTTTTAGCATCCAGgcaggaaactatgactatgccttt-------aacttagattacatgaaa----gaattgtctccttatgga-----------ttctttttaattttgttacttcaatttgt--gcttagatgta----------------------------------------------------
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TTGTTTTTTCTTTTGCAGCTGGGACATAATTGCAGAGAGACTGGGTTTCATGTTGGTTTTTGGAGATTTAGTGTGGATTCCTTTCACTTTTAGCATACAGgtatttgtc-atgattacgagcttggatgagaaattaaattgttcagacttgcaatttattcacctgtgtgggaagtgaaacttgctactgattttgttagctccatttttttatttttattcatctcttccacattaaaatcttgaatgtattgacaatctgcaattgctattag
upper sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G21450.2 (Glycine max), 5'ss of exon 9
ATGGGATATCATTGCGGAGAGATTGGGCTTCATGTTGGTGTTTGGGGATCTAGTGTGGATCCCTTTTACTTTTAGCATCCAGgcag-----gaaactatgactatgccttt-aacttagattacatgaaagaattgtctccttatggattctttttaattttgttacttcaatttgtgcttagatgta
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CTGGGACATAATTGCAGAGAGACTGGGCTTCATGTTGGTCTTTGGAGATTTAGTGTGGATTCCTTTCTCTTTCAGCATACAGgtatttgtcaggattacgagtttggatgagaaattaaaaggttcagacgtgcaatttatttgtgtaggcatgggagat--aatacct-gttttgtgcttagtc---
upper sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G52940.1 (Arabidopsis thaliana), 5'ss of exon 9
ATGGGATATCATTGCGGAGAGATTGGGCTTCATGTTGGTGTTTGGGGATCTAGTGTGGATCCCTTTTACTTTTAGCATCCAGgcaggaaactatgactatgcctttaacttaga-------ttacatgaaaga-attgtctccttatggattctttttaattttgttacttcaatttgtgcttagatgta---------------------------------------
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GTGGGACATAATTGCAGAGAGACTAGGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAGgcatgtaactgtgagcctgaacacaaacaagatattaatttatcttattgacagtatcttcttggcatgttacagttattctcggaaacaatattgttctagaatgcttgatcactctgtgactgaattgtcttctctctggtacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110390091|gb|EC954979.1|EC954979EST: TGTTGGTGTTTGGGGATCTAGTGTGGATCCCTTTTACTTTTAGCATCCAG GGTTGGTGGCTTTTAAGAAATCAAGTGGACCTAACAACAGCTGCTATTGTT
genomic: TGTTGGTGTTTGGGGATCTAGTGTGGATCCCTTTTACTTTTAGCATCCAGgcaggaaact ... tttgttatagGGTTGGTGGCTTTTAAGAAATCAAGTGGACCTAACAACAGCTGCTATTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGATATCATTGCGGAGAGATTGGGCTTCATGTTGGTGTTTGGGGATCTAGTGTGGATCCCTTTTACTTTTAGCATCCAGgcaggaaactatgactatgcctttaacttagattacatgaaagaattgtctccttatggattctttttaattttgttacttcaatttgtgcttagatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa