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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGCTCTTATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAGgttagtagaggaccaatcatatttgaaatttgtagattaatgcatatggctagttgtggaggtgctaaattaagatgcaaggctttgatttcttggccttgcctggtttattgtgaaataagtagctagcattcttggcatttgttatgaagtttcccatcttcattctcag

Basic information

species Vitis vinifera
transcript Vv08s0007g03250.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30253288|gb|CB970839.1|CB970839
EST:     ATCCCCCGTCAAAGCTACCACCCAAACCCCTTGAACTATGGGCATATGAG                         GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
genomic: ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
EST: gi|27755146|gb|CB035901.1|CB035901
EST:     ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAG                         GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
genomic: ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
EST: gi|30253209|gb|CB970760.1|CB970760
EST:     ATACACCGTCAAAGCTACCAGANAAACCACTTGAACTATGGGCATATGAG                         NCGANTCCATTCTGCAAAGTTGTACG
genomic: ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACG
EST: gi|110370952|gb|EC934597.1|EC934597
EST:     ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAG                         GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
genomic: ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
EST: gi|32246890|gb|CD712709.1|CD712709
EST:     AACCACTTGAACTATGGGCATATGAG                         GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
genomic: AACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
EST: gi|110413628|gb|EC979423.1|EC979423
EST:     ATACACCGTCAAAGCTACCACCCGAACCACTTGAACTATGGGCATATGAG                         GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
genomic: ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
EST: gi|27578573|gb|CB001268.1|CB001268
EST:     AACCACTTGAACTATGGGCATATGAG                         GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
genomic: AACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
EST: gi|110423056|gb|EC989391.1|EC989391
EST:     ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAG                         GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
genomic: ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTA
EST: gi|28959489|gb|CB339745.1|CB339745
EST:     ATACACCGTCAAAGCTACCACCNNNNCCACTTGAACTATGGGCATATGAG                         GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTA
genomic: ATACACCGTCAAAGCTACCACCCAAACCACTTGAACTATGGGCATATGAGgttagtagag ... tcattctcagGCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTA