1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCAGTGGCTTGGATTGCTCATATCGTCATATATTTGCTGATTGATCCTCCTCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgtactgctatagatttttgctgtctctgttattttatttcctttcactagatgatcttattctgagatgtatcttgtacttcttcgtcag
species | Vitis vinifera |
transcript | Vv08s0007g02270.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGG GTCTTTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGEST: gi|30254542|gb|CB971287.1|CB971287
genomic: TCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgtactgctat ... tcttcgtcagGTCTCTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTG
EST: TCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGG GTCTTTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGEST: gi|294965055|gb|GW838858.1|GW838858
genomic: TCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgtactgctat ... tcttcgtcagGTCTCTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTG
EST: TCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGG GTCTTTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCCTGEST: gi|110361016|gb|EC924466.1|EC924466
genomic: TCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgtactgctat ... tcttcgtcagGTCTCTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTG
EST: TCTGTCTCCTTTCTTAAATGAGGTTTTTATCAAGCTAGATGATGTCTGGG GTCTTTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTG
genomic: TCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgtactgctat ... tcttcgtcagGTCTCTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGTGGCTTGGATTGCTCATATCGTCATATATTTGCTGATTGATCCTCCTCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgtactgctatagatttttgctgtctctgttattttatttcctttcactagatgatcttattctgagatgtatcttgtacttcttcgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT