Sequence
atgc intronic sequence ATGC exonic sequenceCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAGgtaatattcatctactttattgtatagattattttcttacacatgttggaaatgaatgtattgttttccccccatattattttattattctctttaggca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 9
CAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAGgtaatattcatctacttta---ttgtatagat-----tattttcttacacatgttggaaatgaatgtattgttttccccccatattattttattattctctttaggca-------------------------------------------------------------
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CAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAGgtagtgaatatcattgtgaaatttgcataacttgaagtatttttattcaagttttacaagtcaatctaaaaaatcaagaaaataaaattggaggagcaacaaaaagtcaaaaactgcttgttgattattgatgtgccaaagcttaaaaagctctaattgcttttggcag
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 8
CAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAGgtaatattcatctac--------tttattgtatagattattttcttacacatgttggaaat---------gaatgtattgttttccccccatattattttattattctctttaggca--------------------------------------------
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CAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAGgtagtgaacatcattgtgaaattttcataacttgaagtatttgtattcaagtttttcaagtcaatctcaaaaatctagaatataaactggaaaacagcaaaaactgcttgttgattattgatgtacaaaaagctgaaaaaacactaattgcttttggatag
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G14200.1 (Glycine max), 5'ss of exon 9
CAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAGgtaatattcatct-----actttattgtataga-ttattttcttacacatgttggaaatgaatgtattgttttccccccatattattttattattctctttaggca
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CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGgtaaagaacatactgaaaatttcacaacacaaacttatgattttgcg-gtccatcaactgga-acattgctgaaaactttttgttggttattaatgtactga----
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 9
CAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAGgtaatattcatctactttattgtata----gattattttcttacacatgttggaaatgaatgtattgttttccccccatattattttattattctctttaggca
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CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGgtagtgatcatgttgaaaatttcaaaacacgaacgtatgattttgcagtccatcaactggaacattgctgaaatttttttgttggttattaatgtactga----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110423954|gb|EC990307.1|EC990307EST: ATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAG GGTGATGGATAGACTTCCAGAAGCACGGATAGCTTTCATTGGAGATGGCCC
genomic: ATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAGgtaatattca ... aattgaacagGGTGATGGATAGACTTCCAGAAGCACGGATAGCTTTCATTGGAGATGGCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAGgtaatattcatctactttattgtatagattattttcttacacatgttggaaatgaatgtattgttttccccccatattattttattattctctttaggca
- - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccccc