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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatctttaaatacatgcttcatgtgttctttacaggataggaattatccaagcatcatatatgttcccctactgattatatgattttcag

Basic information

species Vitis vinifera
transcript Vv08s0007g00290.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g00290.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G39570.1 (Glycine max), 5'ss of exon 9
TGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatctttaaatacatgcttcatgtgttctttacaggataggaatta-tccaagcatcatatatgttcccctactgattatatgattttcag
||| |||||||   |||| ||   || |||||||| || ||| | ||||||||  | |||||||||||||| ||||||||||||   |||   || |||| |||||         |||   |      || |       | ||  |  ||    | || |||| |   | || ||
TGTCTCTTTCCATCAGAAATTGCTAAAAACATAAAGACTCCACTGTTCCTTGTTCATCCAGCTTATGATTTCTGGCAGgtaagtc-ccttagtattcatgtttcattgtcataaaacatttttttttctaatttttctgtgatggacatttga-tgctaattaaaacgtatttag

upper sequence: Vv08s0007g00290.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G09410.3 (Arabidopsis thaliana), 5'ss of exon 9
TGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgt--aagtaatc--tttaaatacatgcttcatgtgttctttacagg-ataggaattatccaagcatcatatatgttcccctactgattatatg---attttcag
||| | ||||||||||||||  | || ||||||| ||| || || || |||||||| ||||| || ||||||||||||||   |||   |  |  ||  |   ||  ||  | ||   | |    ||  || ||  |      |||| | |  |    |||| ||   |     |  |||||
TGTATGTTTCCTCAAGAATTCCTGAAAAACATAAGAACTCCGGTATTTCTTGTCAATCCAGCCTACGATTTTTGGCAGgttagagttgccaatccaagcatgagcagcacttattgcctgcttccattagatttgactccaattcatgtttactgttttactaataccaaacatacattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248985|gb|CD714804.1|CD714804
EST:     ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG                         ATTCAACATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: gi|32267540|gb|CD716503.1|CD716503
EST:     ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG                         ATTCAACATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: gi|30321805|gb|CD005067.1|CD005067
EST:     ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG                         ATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: gi|27581176|gb|CB003871.1|CB003871
EST:     ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG                         ATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: gi|27581112|gb|CB003807.1|CB003807
EST:     ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG                         ATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: gi|27579922|gb|CB002617.1|CB002617
EST:     ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG                         ATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: gi|32269551|gb|CD718710.1|CD718710
EST:     ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG                         ATTCAACATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA