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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAATATTAATCGTTCGCTTCTTGCTTTGGCAAACTGCATCAATGCTCTGGGCAAACAGCAAAAAAAGGGTCTTGCATATGTTCCTTATCGTAATAGgtatctgaattgtgattgctgtaatatggaaccctctccaacattgtagctaatgcctagtttttgcag

Basic information

species Vitis vinifera
transcript Vv07s0205g00140.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S7_82V6.1 (Physcomitrella patens), 5'ss of exon 9
GAGCCAATATTAATCGTTCGCTTCTTGCTTTGGCAAACTGCATCAATGCTCTGGGCAAACAGCAAAAAAAGGGTCTTGCATATGTTCCTTATCGTAATAGgtatctgaattgtgattgctgtaatatggaaccctctc-----caacattgtagctaatgcctagt-ttttgcag--------------------------
| || ||||| || ||||| ||||||||||| || ||||||||||||||||| || || || ||||| || || || || ||||| || ||||| || |||||  |   |    |||  || | | || ||   |||        | | || |    || |  | | | ||  ||                          
GTGCGAATATCAACCGTTCACTTCTTGCTTTAGCTAACTGCATCAATGCTCTTGGAAAGCAACAAAAGAAAGGCCTAGCCTATGTCCCATATCGGAACAGgtacattgttctcaattcatg-attttgaaagtatctgagtggtgagaatgaattgtattctcattatcttatagcctaactgaatgagtatttgagtcct