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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcag

Basic information

species Vitis vinifera
transcript Vv07s0104g01280.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 9
TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattt-tctgtttctgtttatgatttttgcag
|| |  |||| || ||||||||||| |||||||| || || ||||| |||||||| ||||| ||||||||||| || || ||||||||||| || |||||||||  || |           ||| ||    | ||   |  | | | | | || |||   ||   | |  | ||||| ||      |  || |  | |||||     | | |  |  |   
TGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAgtaaattata-----------attctc----attccatattctactgtttaatgattagcttcagttcgtagaaaaactaaacaaaacttactggtttgttttgtcctttcacctcag---

upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 10
TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcag
|| |  || | ||||||||||||||||| ||||| |  || || || |||||||| ||||| |||||||| ||||| ||||| || ||  | || || ||||| |     |||  | ||  | |||  |      ||| | ||     ||| |  |||   ||||     |||| | ||||||   |||   || ||| |  | || ||   |||| |||
TGCTAGATCTGAGTGGCATTCTCACTGTGTTCTTCTCTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGCTCTAGGATTACTACCAAgtatgtactgtctg-ataatcagttttac------tggcaacc-----cttgtggtttc--ttttagatgaaaatatttatgt-atatg-gcttcctgatattcttcattcattttacag

upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 7
TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcag
|| |  || | ||||||||||| || |||||||| ||||| || || ||||| || ||||||||||| || ||||| || || ||||||||||| || ||||||  ||   |||       ||||| ||     || |            || | |||   || | |  || |||    ||| ||  || |||   | |     ||| | |||     ||
TGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaa-ttattcctt----gtcattttttcg----ctag------------taatgtttctgttctgcttaataaacga-atgctgactgaattccttttgggcctttttcattcacttag

upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G311165_T01 (Zea mays), 5'ss of exon 9
TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcag
|| || |||| ||||||||||||||||| || || || || || || ||||||||||| || ||||| || || || |||||||| || ||||| || |||||||    | |||||    ||  ||||     | ||||   ||||| ||| | ||  |   || |      ||   ||||| |  ||||| | |  | |   | | |            
TGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCAAgtaagt---agcttca----taccttct----gtatgga---catttgcttttgatcatgcattcttt-ggtaatgcttatgcta-atgtactattggatg--gatcacag---------

upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S169_48V6.1 (Physcomitrella patens), 5'ss of exon 9
TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaat-ctggaacccattttcttattattttattttttcccaaaa-------aaaattatgttgcatgtattttctgtttctgtttatgatttttgcag-----------------------------------
| ||||| || ||||| |||||| | || ||||||||||| ||||| ||||| || ||||| ||||||||||| || || | |||  || |||| |  ||||| | |  ||  |       | |||||     |  || ||   | | | |  |||| |    | ||     ||       | ||||   | | |  ||    |  | |    |  ||||  |    |                                   
TTTTCTACTTGAGTGGAATTCTCTCAGTGTTCTTTTGCGGCATTGTAATGTCTCATTACACTTGGCATAACGTCACGGAGAATTCTCGAATCACAAGCAAgtacgttttataatgtacctcagtttctatgggtgttgcaaattagtatttgtttatgtcgaatatttttggaacagatgtagaatttcctcggaactagacccattattcaatgctgatactaagcgtcaatgttatgttgatacgttttggttaattgcag

upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcag
| ||||| || ||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||||||||||| || |||||||| ||  || | ||||| | |||| |           ||  || |  ||  |||| | |      | || | | |||  ||      || ||     |||  ||  |    |  | | ||  | |   |  | ||  || 
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaac-----------aaccatctcttctgaatcggaa------tgtcctgtcattcaatggaacacctaagttgtttaaattata---gtcatatattaatatcctttgtcttaacac

upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S31_203V6.1 (Physcomitrella patens), 5'ss of exon 10
TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttccca--aaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcag
| |||||  | ||||| ||||| || || |||||||| || ||||| |||||||||||||||||||||||||| |||||||| ||| |||| || || ||||| ||             || | ||||   | |  |||   | ||||| | | |    ||||||  |     || |    | ||  || | |  |   | ||  || |||           
TTTTCTACCTGAGTGGAATTCTTACCGTCTTCTTTTGTGGCATTGTAATGTCACACTACACCTGGCATAACGTCACTGAAAGCTCACGAGTAACTACCAAgtaggc-------------atctcttctttcagttgggatgtccttttcatctaacagaatttttatctgttgaataggccacgt-acaagcagctcaagatttagtctatttg--------