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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatgaacccttctgccactttttctctatcctattctaccccaagtttttctcaggtgaggttatctctacttaatgacgctaacttgataattctctttgtag

Basic information

species Vitis vinifera
transcript Vv07s0104g00900.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131951|gb|CB917290.1|CB917290
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|352778369|gb|FQ465679.1|FQ465679
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAATTCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|110383437|gb|EC947810.1|EC947810
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|27579975|gb|CB002670.1|CB002670
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTA
EST: gi|352778075|gb|FQ467128.1|FQ467128
EST:     AATACATCTACTCTGGATCTAGGGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|34542793|gb|CF511025.1|CF511025
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|30328821|gb|CD012083.1|CD012083
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|110382432|gb|EC939539.1|EC939539
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|352781787|gb|FQ469085.1|FQ469085
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|37183856|gb|CF603210.1|CF603210
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|352769756|gb|FQ468684.1|FQ468684
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|34542877|gb|CF511109.1|CF511109
EST:     AATACATTTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA