Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGGGgtaactattttctgttctctgcttgtcaatgtttgtattgcattcaagtgtggtataagtgttcctttcttggttaatagtattctgctgattattggaa...

Basic information

species Vitis vinifera
transcript Vv07s0031g02090.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g15900.2 (Oryza sativa), 5'ss of exon 5
CCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGGGgtaactattttctgttctctgcttgtcaatgtttgtattgcattcaagtgtggtataagtgttcctttcttggttaatagtat-tctgctgattattggaa-
| |||||||||||||||||||| |||||  ||||||||||  ||||||| ||||| || ||||| || ||||| |||||||| || || ||||| || |||||| | |   || || ||  || |  ||  ||    ||   || |  |    | |  || |   || |  | |   || ||  ||   |   ||||  |  
CTATTATACGGAGTAATTTGCAGTATGCTTCTCTAAGTGCCCTGAGAAGGCTTCCACTTGATCCTGGTAATCCGGCATTTCTGCACCGAGCTGTCCAAGGgtaagtgtgaccttttttcctctgg--aaacttaagtttaggtttattttccatgtctgtttagtttaccagttatctactacctccatttcatattatatg

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G03020.1 (Glycine max), 5'ss of exon 8
CCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGGGgtaa-ctattttctgt-tctctgcttgtcaatgtttgtattgcat--tcaagtgtggtataagtgttcctttcttggttaatagt-attctgctgattattggaa--------------------------------------------------------------------------------------
| || || || || ||| | |||||||| ||  |||||||| |||||||||| ||||| ||||| ||||||||||||||||| |||   ||||| || ||||||  || | | ||   |    |||           || | |||   |     | |   || | ||   |||||| ||  |  | ||| ||  | |      ||                                                                                      
CTATCATCCGAAGCAATCTACAATATGCTGCCTTAAGTGCTCTGAGAAGACTCCCTCTGGATCCTGGAAATCCAGCATTTCTGCATTATGCTGTACAAGGgtaagttactctgtgaaccaaaacttagaggaacaaatagttcatggcctctctttgagcaactttttacttcttgctttttgtttattttggagctggcattaactttgtataatttattattagcttttgcattcttcccttgtctctggtctatagttctcaaatctcaaaactagagttgactgcag

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 8
CCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGGGgtaactattttctgt--tctctgcttgtcaatgtttgtattgcattcaagtg--tggtataagtgttcctttcttggttaatagt-attctgctgattattggaa--------------------------------------------------------------------------------------
| || || || || ||| | |||||||| ||  | |||||| |||||||||| ||||| ||||| || |||||||||||||| |||   ||||| || |||||| |   | ||     |    |||           || | |||         | ||  || | ||   |||||| ||     | ||| ||  | |      ||                                                                                      
CTATCATCCGAAGCAATCTACAATATGCTGCCTTGAGTGCTCTGAGAAGACTCCCTCTGGATCCTGGGAATCCAGCATTTCTGCATTATGCTGTACAAGGgtaagttactcctagaaccaaaacttagaggaacaaatagttcatggcgtctctttgtgcaacttttttcttcttgcttttcgtttattttggagctggcattaagtttgcataatttattattagcttttgcattcttccattgtttctggtctatagttctcaaatctcaaaactagagttgactgcag

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 5'ss of exon 8
CCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGGGgtaa----ctattttctgttct-----ctgcttgtcaatgttt---gtattgcattcaagt---gtggtataagtgttcct------------ttcttggttaatagt--attctgctgattattggaa---------------------------------
| ||||| || ||||| |||||||| || ||| | |||||  |||||||||| ||||| |||||||||||||||   ||||| || || || |  |||||||||     | ||||  |||||     ||   | |  | || |   |||||| ||| ||||   ||| | || || |  |             || |||||  ||     ||| ||| |  |||||||                                  
CGATTATGCGAAGTAACTTGCAATACGCTGCTATGAGTGCACTGAGAAGACTCCCTCTTGATCCAGGAAATCCACTTTTTCTGCACCGTGCAGCTCAGGGgtaagactttttttttggttctttctactatctttttaagtatagagtattggatttaagtatagtgatgtaggtttcacaagagcaattgaatttttggtctattcctaattatgcagtatattggacagttattctcgtattcacacttttatgttgcag