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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTGCTGTATGCAATTTGGCATCAATTGCTCTACCGCGATATGTTAGAGAAAAGgtgcgtcatatgattgacatgtgtgtatcaaaattactttgttctgatttgtaattttctatttggttag

Basic information

species Vitis vinifera
transcript Vv07s0031g01990.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 9
TTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTGCTGTATGCAATTTGGCATCAATTGCTCTACCGCGATATGTTAGAGAAAAGgtgcgtcatatgattgacatgtgtg-tatcaaaattactt------tgttctgatttgtaattttct-atttggttag--
|||||||||||| |||||||| ||||||||||| ||  ||  |||||||||||| |||||| ||||||| |||||| |||| || | ||| || ||||||||   || | | | ||   ||  || | ||||   ||  |      ||||   || | | ||  |   |||  |||    
TTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAAACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTTTGTAAGGGAAAAGgtatatcttgttagtgctttggctgatttcaaccctaaatgttgtatgtttacatgtctgatcataagattctgttgcag

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 9
TTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTGCTGTATGCAATTTGGCATCAATTGCTCTACCGCGATATGTTAGAGAAAAGgtgcgtcatatgattgaca-tgtgtgtatcaaaattactttgttctgatttg---taattttctatttggttag-------------------------
 |||||||| ||||||||||| ||||||||  | ||| |   |||||||||||| |||||| ||||||||||||| ||||| |||||||| |||||||||||  |  || |  | ||   |   |||||     | || || ||  | ||||    |||||| | |||  | |                          
ATCAAACTTGTGTACTGAGATAATTGAGTATTCAAGTCCAACTGAAACTGCTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGgtatgaaatctcttagatgctccatgtattgggctcacattatttggttttggaccaattttttttttcctgatctaaatatttttctccttactgcag

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 9
TTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTGCTGTATGCAATTTGGCATCAATTGCTCTACCGCGATATGTTAGAGAAAAGgtgcgtcatatgattgacatgtgtgtatcaaaattac--tttgttctgatttgtaattttctatttggttag-------------------------
 |||||||| ||||||||||| ||||| ||  | ||| |   |||||||||||| |||||| ||||||||||||| ||||| |||||||| |||||||||||  | ||| |  | ||    ||| |||     | ||  |||||| ||      |||||| | |||  | |                          
GTCAAACTTGTGTACTGAGATAATTGAATATTCAAGTCCAACTGAAACTGCTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGgtatgacatctcttggatgc-tgtctatggggctcacgttttgttttggacc--aattttttttttcatgatctaaatatttttttccttactacag

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 10
TTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTGCTGTATGCAATTTGGCATCAATTGCTCTACCGCGATATGTTAGAGAAAAGgtgcgtcatatgattgacatg---tgtgtatcaaaattactttgttctgatttgtaattttctatttggttag
                                    | |    ||||| ||||| ||||| ||||||||||||||||| |||| |||||| ||||| |||||  | |||     || |||      |   | |  |||||     | |||||| ||  |              
------------------------------------TCCAACAGAAACGGCTGTGTGCAACTTGGCATCAATTGCTCTGCCGCAATATGTAAGAGAGAAGgtaggacatcc--ctggcatacttcataggttaggattacaca--tttgatttctaggtag------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 9
TTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTGCTGTATGCAATTTGGCATCAATTGCTCTACCGCGATATGTTAGAGAAAAGgtgcgtcat-------atgattgacatgtgtgtatcaaaattactttgtt-ctgatttgtaattttctatttggttag--------------------------------
 |||||||| || |||||||| |||||||| || ||| |    ||||| ||||| ||||| |||||||| ||||| || ||||||||||| ||||| |||||  | |||       ||  || |  |||  | |||| |  || ||  || ||   | |  ||   | |  | ||||                                 
ATCAAACTTGTGCACTGAGATAATTGAGTATACAAGTCCAACAGAAACGGCTGTGTGCAACTTGGCATCGATTGCCCTGCCGCGATATGTAAGAGAGAAGgtaggacatccctggcatacttcatgtgttaggatcagacgtatttgatttcttggtagctataggccaacttgttattcctgatctaggatgtttatccacttgcatag