1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAATATGTTTAAGGATGAATTTGAAAACGAGAAGAACATGCTTGGGGGCTCCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttctctgtacatttagttccatacaataatttttttgatcatttgagttttgagttattgggtaattatttgtatgcaaaactgtcttcttttcag
species | Vitis vinifera |
transcript | Vv07s0031g01970.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACAT AACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTTEST: gi|110729885|gb|EE106329.1|EE106329
genomic: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttc ... ttcttttcagAACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
EST: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACAT AACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTTEST: gi|110364122|gb|EC927769.1|EC927769
genomic: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttc ... ttcttttcagAACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
EST: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACAT AACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTTEST: gi|110381624|gb|EC934958.1|EC934958
genomic: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttc ... ttcttttcagAACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
EST: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACAT AACATCCTTGTTGTCTCAAAATACTACTCGAGGATAACGTTAAAGAGACTTEST: gi|110387763|gb|EC952457.1|EC952457
genomic: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttc ... ttcttttcagAACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
EST: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACAT AACATCCTTGTTGTCTCAAAATACTACTCGAGGATAACGTTAAAGAGACTTEST: gi|351012778|gb|FQ430341.1|FQ430341
genomic: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttc ... ttcttttcagAACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
EST: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACAT AACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTTEST: gi|110684729|gb|EE062340.1|EE062340
genomic: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttc ... ttcttttcagAACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
EST: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACAT AACATCCTTGTTGTCTCAAAATACTACTCGAGGATAACGTTAAAGAGACTTEST: gi|110387558|gb|EC952238.1|EC952238
genomic: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttc ... ttcttttcagAACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
EST: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACAT AACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
genomic: CCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttc ... ttcttttcagAACATCCTTGTTGTCTCAAAATACTACTCAAGGATAACGTTAAAGAGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATATGTTTAAGGATGAATTTGAAAACGAGAAGAACATGCTTGGGGGCTCCTTGGGTGACAAAGCTGCAGAAGATCTAAGACAGAGAATAATTGAACATgtagtgtttctctgtacatttagttccatacaataatttttttgatcatttgagttttgagttattgggtaattatttgtatgcaaaactgtcttcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG