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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATTAGTCTGGGGATCAAGCGTGAAACACAAGCCCCAAAGAGTTGGCAGGgttgattctatgaaccgactctataataatcttcatttcgttttattgtatctcttaatttacatttggtgccttttgcaaaccag

Basic information

species Vitis vinifera
transcript Vv07s0031g01620.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 9
TGCATTAGTCTGGGGATCAAGCGTGAAACACAAGCCCCAAAGAGTTGGCAGGgttgattctatg---aaccgactctataataatcttcatttcgttt---tattgtatctcttaatttacatttggtgccttttgcaaaccag------------------------------------
||| || |||||||| ||||| | |||||||||||| ||||||||||||| ||||||| || |    ||   ||  |||  |   ||||||    |||   |||||||| |||   ||||   ||    |   | |   | ||                                     
TGCTTTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAAGgttgatactgtacttaatttacattattttttgcttcatcctcttttcgtattgtatttctacttttattcttctccctcgtagttgaacatgtcacctactaagtggaatatgttgttgcgtaccag

upper sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 9
TGCATTAGTCTGGGGATCAAGCGTGAAACACAAGCCCCAAAGAGTTGGCAGGgttgattctatg---aaccgactctataataatcttcatttcgttt---tattgtatctcttaatttacatttggtgccttttgcaaaccag------------------------------------
||| || |||||||| ||||| |  ||||||||||| ||||||||||||| |||||||  | |    ||   ||| |||  |   ||||||    |||   | |||| | |||   ||||   ||    |   |||   | ||                                     
TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattgtacttaatttactttatttttggcttcatcctctttttgtgttgtgtttctacttttattcttctccctcattgttgagcatgccacctactaatcgaaatatgttgttgcttaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71882070|gb|DT031125.1|DT031125
EST:     CATTAGTCTGGGGATCAAGCGTGAAACACAAGCCCCAAAGAGTTGGCAGG                         GAGCATGAACTGGAAGATGAAGATGTCGTTCAGATTATCAAAAAGGTGTGA
genomic: CATTAGTCTGGGGATCAAGCGTGAAACACAAGCCCCAAAGAGTTGGCAGGgttgattcta ... tgcaaaccagGAGCATGAACTGGAAGATGAAGATGTCGTTCAGATTATCAAAAAGGTGTGA
EST: gi|29783158|gb|CB349145.2|CB349145
EST:     CATTAGTCTGGGGATCAAGCGTGAAACACAAGCCCCAAAGAGTTGGCAGG                         GAGCATGAACTGGAAGATGAAGATGTCGTTCAGATTATCAAAAAGGTGTGA
genomic: CATTAGTCTGGGGATCAAGCGTGAAACACAAGCCCCAAAGAGTTGGCAGGgttgattcta ... tgcaaaccagGAGCATGAACTGGAAGATGAAGATGTCGTTCAGATTATCAAAAAGGTGTGA