Sequence
atgc intronic sequence ATGC exonic sequenceAGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCTgtgagttccatccatcataataatggccagactttcttcagtgccacttgcagtatttgatgaattgatgagttttaaccatataatgggcaaaaaatgatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os04g54640.1 (Oryza sativa), 5'ss of exon 9
AGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCTgtgagttccatccatcataataatggccagactttcttcagtgccacttgcagtat-ttgatgaattgatgagttttaaccatataatgggcaaaaaatgatgcag
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AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACCTTACAAGATGGGCAgtgagtt--gtctgtt-tattaatttttgaactagaagacacaaatcgtgctacatatcgattaatgcagagtttttttttttttga--atcttctggttttgtag
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os04g54640.2 (Oryza sativa), 5'ss of exon 9
AGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCTgtgagttccatccatcataataatggccagactttcttcagtgccacttgcagtatttgatgaattgatgagttttaaccatataatgggcaaaaaatgatgcag
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AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACCTTACAAGATGGGCAgtgagtt--gtctgtt-tattaatttttgaactagaa--gacacaaatcgtgctacat-atcgattaatgcag--------------------------------
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G004352_T01 (Zea mays), 5'ss of exon 9
AGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCTgtgagttccatccatcataataatggccagactttcttcagtgccacttgcagtatttgatgaattgatgagttttaaccatataatgggcaaaaaatgatgcag
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AGGTTCATAAACAGAACTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAGTGAgttatacttccatctctcttggcctaacagaaa-cagaacca--tgtcatagcctaaatgtcggttgatgccgttcttttggtatttcag-----------
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G31720.1 (Glycine max), 5'ss of exon 9
AGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCTgtgagttcc-atccatcata-ataatggccagactttcttcagtgccacttgcagtatttgatgaattgatgagttttaaccatataatgggcaaaaaatgatgcag
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AGATTTATTAACAGAACCAAGCCACCACTCAGCAAAGATCAGCAACAAAATCTCACAAGATGGGCCgtatgtttttaaataccatatatgtttatgataaatacctaaaa--taaatgcagctctcaa---atttatgcatttttgtgct-taaaaagctcatgtt--tgcag
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G14970.1 (Glycine max), 5'ss of exon 9
AGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCTgtgagttccatccatcataataatggccagactttcttcagtgccacttgcagtatttgatgaattgatgagttttaaccatataatgggcaaaaaatgatgcag
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AGATTTATTAACAGAACCAAGCCACCCCTCAGCAAAGATCAGCAACAAAATCTCACAAGATGGGCAgtatgtttt-caaatactatctatgtttacagtttgataagtaccaaaaataa-atgtagcccttttgtg---cttaagaagctcatggttgcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32270105|gb|CD719264.1|CD719264EST: GCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCT GTTTTATTTGCGGGATCACTCATTAAA
genomic: GCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCTgtgagttcca ... aatgatgcagGTTTTATTTGCGGGATCCCTCATTAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCTgtgagttccatccatcataataatggccagactttcttcagtgccacttgcagtatttgatgaattgatgagttttaaccatataatgggcaaaaaatgatgcag
- - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG