Sequence
atgc intronic sequence ATGC exonic sequenceCGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgcttgtttattcttccacgtgctatttttatattgaagagaattggctgtgaaatggttctgaacagcagtcgtgttggacatgcacaatgcttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 9
CGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgcttgtttattcttccacgtgctatttttatattgaagag-aattggctgtgaaatggttctgaacagcagtcgtg--ttggacatgcacaatgcttg
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AGGAACCTGCTTCGGCTCCGTGGATTTTGCATGACGCCTACAGAACGGTTACTTGTCTATCCCTACATGGCTAATGGGAGTGTCGCATCACGATTGCGAGgtgc--cttaatcttccttactttttcttagagtaaatccattaatagtttcttacacgtttgtttgcatgcttaaacataaatggcacagctattatggtt-
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 9
CGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtac--tgcttgtttattcttccacgtgctatttttata--ttgaagagaattggctgtgaaat---ggttctgaacagcagtcgtgttggacatgcacaatgcttg
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AGAAATCTGCTGCGTTTACGAGGGTTCTGTATGACACCCACAGAAAGGTTGCTTGTGTATCCATACATGGCTAATGGAAGCGTTGCGTCACGTCTTAGAGgtacgttgccttttttttttccaatctgacatccctgtatctttcagataattggagggttgatttgggttttatattatag-------------------------
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 9
CGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgcttgtttattcttccacgtgctatttttatattgaagagaattggctgtgaaatggttctg--aacagcagtcgtgttggacatgcacaatgcttg---------------
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AGAAATCTATTGCGTCTTCGTGGATTCTGTATGACACCAACAGAAAGGTTGCTTGTGTATCCATACATGGCTAATGGAAGTGTTGCGTCACGTTTAAGAGgtatttttttagtatagtgctgttcacgtattttaatttgtatc---tttcatgttacacctctctaacaacagcatcaaactctgaactttttattactttggttttattctgtag
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 9
CGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgc-ttgtttattcttccacgtgctatttttatattgaagag----aattggctgtgaaatggttctgaacagcagtcgtgttggacatgcacaatgcttg-
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AGGAACCTTCTCCGACTTCGTGGTTTCTGCATGACACCTACTGAACGGTTGCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttattctttattataatttataaaaaacctg-attccatagtcccaactaaacaagcagaacgttagcttcctgttctcattaaactttctgattccatag
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G71830.1 (Arabidopsis thaliana), 5'ss of exon 9
CGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgcttgtttattcttccacgtgctatttttatattgaagagaattggctgtgaaatggttctgaacagcagtcgtgttggacatgcacaatgcttg-----
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CGAAACCTGTTGAGATTACGAGGTTTCTGTATGACACCGACCGAGAGATTGCTTGTGTATCCTTACATGGCCAATGGAAGTGTTGCTTCGTGTCTCAGAGgtaaaaactaaacatcttgtgctctctctcaattactttgacgtgaagtgttttttcatgttttcctttatgggttcataattgttggttacactaatgacacag
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G34210.1 (Arabidopsis thaliana), 5'ss of exon 9
CGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgcttgtttattcttccacgtgctatttttatattgaagagaattggctgtgaaatg--------gttctgaacagcagtcgtgttggaca-tgcacaatgc--ttg--------------------------
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AGAAATCTCCTCAGGCTACGCGGTTTCTGTATGACCCCTACCGAGAGATTGCTTGTTTATCCTTACATGGCTAATGGAAGTGTCGCTTCCTGTTTGAGAGgtaac-cttggaattttaactgtttg-tatcataaagtagaaagactcccacaatgatgtataagtgttgtttttgatcttatccatttttaaaactttccaatacaattgagtgagctttcttgaaatgattacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110371438|gb|EC935464.1|EC935464EST: ACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAG AACGTCCACCATCAGAACCACCACTTGATTGGACCACTAGGAAAAGAATAG
genomic: ACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgcttg ... attcttgtagAACGTCCACCATCAGAACCACCACTTGATTGGACCACTAGGAAAAGAATAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgcttgtttattcttccacgtgctatttttatattgaagagaattggctgtgaaatggttctgaacagcagtcgtgttggacatgcacaatgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa