Sequence
atgc intronic sequence ATGC exonic sequenceCTTCATCTGGTCGCATACTTGAGGCACTGCATGTTGATCCTGCTTCTGGCATATCCCTTGACAAGGAAAAGCAGTCCAAAGTGTTGAAGCCATCAGTGAGgtattttgtaatatgtgggttgaaatttgtattatatcttattgcttttattttttaaatattggttaatggatatgcatgtttagagaggaggattagtaatgtgcttatttctgtttattgcccttttttgtcttactcttctacttatacagactgttgtttaaactcttttgtttatttctctgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G05990.1 (Glycine max), 5'ss of exon 8
CTTCATCTGGTCGCATACTTGAGGCACTGCATGTTGATCCTGCTTCTGGCATATCCCTTGACAAGGAAAAGCAGTCCAAAGTGTTGAAGCCATCAGTGAGgtattttgtaatatgtgggttgaaatttgtattatatcttattgcttttattttttaaatattggttaatggatatgcatgtttagagaggaggattagtaatgtgcttatttctgtttattgcccttttttgtcttactcttctacttatacagactgttgtttaaactcttttgtttatttctctgacag
| ||||| || |||||||||||||| |||||||||||||||||||||| | || |||| ||||| ||| | ||||| ||||| |||||||| |||||| | || || | || || || | || ||| |||| | | | || || || ||| | ||| | | ||| |||
CAACATCTAGTTGCATACTTGAGGCATTGCATGTTGATCCTGCTTCTGGTGTGTCAATTGATAAGGATAAGGGCACTAAAGTCTTGAAACCATCAGTAAGgtatgacatcatccaacagtgtatatgtgaatgg-acatttttgtaattatatgt--ggtttttgtagtaccatctgctttattaagcatcaa-atttgtatca----------------------------------------------------------------------------------------
upper sequence: Vv07s0031g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G39280.1 (Glycine max), 5'ss of exon 9
CTTCATCTGGTCGCATACTTGAGGCACTGCATGTTGATCCTGCTTCTGGCATATCCCTTGACAAGGAAAAGCAGTCCAAAGTGTTGAAGCCATCAGTGAGgtattttgtaatatgtgggttgaaatttgtattatatcttattgcttttattttttaaatattggttaatgg----atatgcatgtttagagaggaggattagtaatgtgcttatttctgtttattgcccttttttgtcttactcttctacttatacagactgttgtttaaactcttttgtttatttctctgacag
| |||||||| ||||||||||||| |||||||||||||||||||||| |||| |||| ||||| ||| | ||||| ||||| || ||||| |||||| | | || | || || || | | |||||| || |||| |||| ||| || ||| | ||| | | || |||
CAACATCTGGTTGCATACTTGAGGCGTTGCATGTTGATCCTGCTTCTGGTGTATCAATTGATAAGGATAAGGGCACTAAAGTCTTGAAACCGTCAGTAAGgtatgacatcacccaacagtgtatatgtgaatgg------actttttttataaactatatat-ggtttgtggtaccatctgctttattaagcatcaaattttgtatc-----------------------------------------------------------------------------------------
upper sequence: Vv07s0031g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G36980.3 (Arabidopsis thaliana), 5'ss of exon 9
CTTCATCTGGTCGCATACTTGAGGCACTGCATGTTGATCCTGCTTCTGGCATATCCCTTGACAAGGAAAAGCAGTCCAAAGTGTTGAAGCCATCAGTGAGgtattttgtaatatgtgggttgaaatttgtattatatcttattgcttttattttttaaatattggttaatggatatgcatgtttagagaggaggattagtaatgtgcttatttctgtttattgcccttttttgtcttactcttctacttatacagactgttgtttaaactcttttgtttatttctctgacag
| || | || || || |||||||| ||||||||||||||||| |||| ||||||||||| || || || ||||| || | ||||||||||| || | | | || | | | | | || ||| |||| | | || |||| | || || || ||| |||| | | | ||||| ||
CATCGCCAGGCCGTATTCTTGAGGCGCTGCATGTTGATCCTGCATCTGATATATCCCTTGAGAAAGACAAAGTTGCCAAACCAGCAAAATCGACAGTGAGgtat--------ggatgagattacatatttttagtttttttttggttttgtatcttc--ccttggcttttgttgttgtgaatt------ggaacattattcctct-tttattcttgcag-------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30130748|gb|CB916087.1|CB916087EST: ATATCCCTTGACAAGGAAAAGCAGTCCAAAGTGTTGAAGCCATCAGTGAG TACATCATCTGCATTGTCAAAGCTAAGCAAGCCAACAACTATTGGAGGCCC
genomic: ATATCCCTTGACAAGGAAAAGCAGTCCAAAGTGTTGAAGCCATCAGTGAGgtattttgta ... tctctgacagTACATCATCTGCATTGTCAAAGCTAAGCAAGCCAACAACTATTGGAGGCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCATCTGGTCGCATACTTGAGGCACTGCATGTTGATCCTGCTTCTGGCATATCCCTTGACAAGGAAAAGCAGTCCAAAGTGTTGAAGCCATCAGTGAGgtattttgtaatatgtgggttgaaatttgtattatatcttattgcttttattttttaaatattggttaatggatatgcatgtttagagaggaggattagtaatgtgcttatttctgtttattgcccttttttgtcttactcttctacttatacagactgttgtttaaactcttttgtttatttctctgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC