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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcgaacacttctatgcctttacttttgattgcatctctctctctctctctctctctctctctctcgttctctatccccacacacatgcatgcatatctttatgtatttgtgtccctatcaaaaaggagtttaacttcttcattttatgcacaaaaaatatagtctattcttatttacaatattatgtggccag

Basic information

species Vitis vinifera
transcript Vv07s0031g00600.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 9
AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcgaacacttctatgcctttacttttgattgcatctctctctctctctctctctctctc-tctctcgttctctatccccacacacatgcatgcatatctttatgtatttgtgtccctatcaaaaaggagtttaacttcttcattttatgcacaaaaaatatagtctattcttatttacaatattatgtggccag
| |||||||| |||||||||   ||||| |||||||||||||| |||||||| || ||||||||||| || || |||||||          |||| |  |||  | ||| | || |      | |||   | |  |    |  | | || |  |  | |   ||     |  || || ||   |                                                                                             
ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACACCTAAGgcaa------gagtttctttagcttgtcattttactgtagaatattttctgggtattgcagagtaatgtgtcatgtttaaccaagacttgttttaat-caaattaat---------------------------------------------------------------------------------------------

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 9
AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcgaacacttctatgcctttacttttgattgcatctctctctctctctctctctctctctctctcgttctctatccccacacacatgcatgcat-atctttatgtatttgtgtccctatcaaaaaggagtttaacttcttcattttatgcacaaaaaatatagtctattcttatttacaatattatgtggccag
| |||||||| |||||||||   ||||| |||||||||||||| |||||||| || ||||||||||| || || |||||||          |||| |  |||  | ||| | || |      | |||   | |  |    |       ||  | | |  ||| | || ||  |  || |  || ||                                                                                           
ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGgcaa------gagtttctttagcttgtcattttactgtagaatattttctggatattgcagagtaatgt--gtcatgtgtaacca-agacttgttttaatcaaattaat-------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415764|gb|EC981696.1|EC981696
EST:     CTCATGAACTGGGAGGGTCTACTGTAGTTGTTGATCGAGCAACCCCCAAG                         GAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
genomic: CTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcga ... atgtggccagGAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
EST: gi|349818091|gb|FQ408866.1|FQ408866
EST:     CTCATGAACTGGGAGGGTCTACTGTAGTTGTTGATCGAGCAACCCCCAAG                         GAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
genomic: CTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcga ... atgtggccagGAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
EST: gi|110429617|gb|EC996114.1|EC996114
EST:     CTCATGAACTGGGAGGGTCTACTGTAGTTGTTGATCGAGCAACCCCCAAG                         GAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
genomic: CTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcga ... atgtggccagGAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
EST: gi|351020076|gb|FQ445683.1|FQ445683
EST:     CTCATGAACTGGGAGGGTCTACTGTAGTTGTTGATCGAGCAACCCCCAAG                         GAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
genomic: CTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcga ... atgtggccagGAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
EST: gi|349811719|gb|FQ409716.1|FQ409716
EST:     CTCATGAACTGGGAGGGTCTACTGTAGTTGTTGATCGAGCAACCCCCAAG                         GAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
genomic: CTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcga ... atgtggccagGAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
EST: gi|349818104|gb|FQ408879.1|FQ408879
EST:     CTCATGAACTGGGAGGGTCTACTGTAGTTGTTGATCGAGCAACCCCCAAG                         GAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA
genomic: CTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGgcaacttcga ... atgtggccagGAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCA