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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAATGTCAAGTTAGCTGCTGCTGAGGAAGCTCTTGCACTATCAATATGGACAACAGCAACAGTTTGTCGAGTTCTCTCCCTTGAAAGTgtaatgtttttcactctagcatcataggcttgtcttcaattcagtagtatctgtttctttcatctgctctaagtagttctctattaatgaagttcttatc...

Basic information

species Vitis vinifera
transcript Vv07s0005g04510.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g04510.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G32580.1 (Glycine max), 5'ss of exon 11
GCCAATGTCAAGTTAGCTGCTGCTGAGGAAGCTCTTGCACTATCAATATGGACAACAGCAACAGTTTGTCGAGTTCTCTCCCTTGAAAGTgtaa---tgtttttcac------tctagcatcat--aggcttgtcttcaattcagtagta-tctgtttctttcatctgctctaagtagttc-tctattaatgaagttcttatc
| |||||  ||| | || |||||||||||||| ||  || ||||| |||||||||  |||||   |||||||||||| |||||||| |||||||     | || ||       |  | ||   |  | | ||||||  || |||| |||  | | |      ||| | ||  ||| ||    ||| ||||             
GACAATGCAAAGCTGGCAGCTGCTGAGGAAGCCCTGTCATTATCAGTATGGACAATGGCAACTACTTGTCGAGTTCTGTCCCTTGATAGTgtaagcacatattccagttgacattcaacagtgttaatgtttgtctg-aactcagaagttctttatagaaaccatttcctgcaagcagaaaatcttttaaa------------

upper sequence: Vv07s0005g04510.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G20320.1 (Arabidopsis thaliana), 5'ss of exon 11
GCCAATGTCAAGTTAGCTGCTGCTGAGGAAGCTCTTGCACTATCAATATGGACAACAGCAACAGTTTGTCGAGTTCTCTCCCTTGAAAGTgtaatgtttttcactctagcatcataggcttgtcttcaattcagtagtatctgtttct--ttcatctgctctaagtagttctct-attaatg----aagttcttatc-------------------------------------------------
   ||||  | ||| || ||||||||||| ||  | |  || ||||| |||||||| ||||||||||||||  ||||||| ||||||| ||||  || | |     ||||||| |    ||   ||  ||     ||| || ||||    |  | ||     || |   ||||| |||  ||     ||||  | |                                                  
ATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACGGCAACAGTTTGTCGTATTCTCTCACTTGAAACTgtacggtctctt--cttagcatctttccttttcttttgatggttcagtgtcggttttagatcaacctatataaaatccatctcttatttgtgccttgagttagtgttttcaaagataacaaatatctgaagttgtaaggtattttctttcttccag