1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGTGCTGGCTTAGCAATGGCTACCATGGATATAATCAAGCTACATGGGGGAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaattttgcttctgatgcatatatttaggcattggctttcttattgtagtagaatccttttctaattttggtttattccatatgatatttctt...
species | Vitis vinifera |
transcript | Vv07s0005g03790.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AATTTTCTAGATGTTGGAGGGAATGCTTCTGAAAGTCAG GTGGTGGAAGCACATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAAEST: gi|34545859|gb|CF514091.1|CF514091
genomic: AATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAG--CATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAA
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|34545781|gb|CF514013.1|CF514013
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|71881691|gb|DT030746.1|DT030746
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|110379096|gb|EC944270.1|EC944270
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|30255821|gb|CB971953.1|CB971953
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|110390462|gb|EC955371.1|EC955371
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|110428351|gb|EC994820.1|EC994820
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|110688710|gb|EE067574.1|EE067574
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAEST: gi|110702283|gb|EE080823.1|EE080823
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAA
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|22007633|gb|BQ792667.1|BQ792667
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTTTAGATGTTGGAGGAAATGCTTTTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|30256178|gb|CB972021.1|CB972021
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|71883833|gb|DT032888.1|DT032888
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|30256398|gb|CB972241.1|CB972241
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|110714835|gb|EE092196.1|EE092196
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|30305949|gb|CB982743.1|CB982743
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|110362830|gb|EC926386.1|EC926386
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATTEST: gi|30256478|gb|CB972321.1|CB972321
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
EST: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAG GTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
genomic: GAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaa ... tgtgaaacagGTGGTGGAAGCATTCAAAATATTGACTGCTGATGATAAGGTCAAAGCAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGCTGGCTTAGCAATGGCTACCATGGATATAATCAAGCTACATGGGGGAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaattttgcttctgatgcatatatttaggcattggctttcttattgtagtagaatccttttctaattttggtttattccatatgatatttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA