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AGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGAAGGGAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaatgacattttttttgtttgagttgaaaagttctaatttaacagcaattatgtttccaaaagggggggataattttcatgcatgggatttctt...
species | Vitis vinifera |
transcript | Vv07s0005g02620.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACG ATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCAEST: gi|110427116|gb|EC993547.1|EC993547
genomic: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaat ... atatctgcagATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCA
EST: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACG ATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCAEST: gi|351025523|gb|FQ435216.1|FQ435216
genomic: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaat ... atatctgcagATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCA
EST: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACG ATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCAEST: gi|26263859|gb|CA814922.1|CA814922
genomic: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaat ... atatctgcagATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCA
EST: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACG ATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCAEST: gi|349826601|gb|FQ418692.1|FQ418692
genomic: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaat ... atatctgcagATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCA
EST: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACG ATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCAEST: gi|110713336|gb|EE089170.1|EE089170
genomic: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaat ... atatctgcagATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCA
EST: AGNAAAAG-CTATGGTCTGGCAGAATTCCTGGGGCTACAGTACCANAACG ATTGGGGGTGATGGTAATGGTTCATGGGGATGACAAAG-CTTAATGATGCCEST: gi|110361565|gb|EC925047.1|EC925047
genomic: AG-AAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaat ... atatctgcagATTGGGG-TGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCC
EST: CTACAGTACCAGAACG ATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCAEST: gi|26265772|gb|CA816835.1|CA816835
genomic: CTACAGTACCAGAACGgtaaataaat ... atatctgcagATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCA
EST: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACG ATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCA
genomic: GAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaat ... atatctgcagATTGGGGTGATGGTAATGGTTCATGGGGATGACAAAGGCTTAGTGATGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGAAGGGAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaatgacattttttttgtttgagttgaaaagttctaatttaacagcaattatgtttccaaaagggggggataattttcatgcatgggatttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggataa